miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12779 5' -57.3 NC_003387.1 + 39352 0.67 0.503854
Target:  5'- uUCGAGaacaGCGACC-CGUCGAGGcCAAu -3'
miRNA:   3'- cGGCUCg---UGUUGGaGCGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 8315 0.67 0.535382
Target:  5'- -gCGAGCACAGCgUCaGCCGcGG-CGAg -3'
miRNA:   3'- cgGCUCGUGUUGgAG-CGGCuCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 25014 0.67 0.535382
Target:  5'- gGCUGAuauGCAgCGGCCU-GUCGGGGUCGg -3'
miRNA:   3'- -CGGCU---CGU-GUUGGAgCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 13334 0.67 0.52479
Target:  5'- cGCCaGGCGCAcgagcACCUCGUacaccuCGGGGUUAu -3'
miRNA:   3'- -CGGcUCGUGU-----UGGAGCG------GCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 8055 0.67 0.52479
Target:  5'- uGgCGAGCaccgGCAGCCccucggccaggaUCGCCGAGGcCGc -3'
miRNA:   3'- -CgGCUCG----UGUUGG------------AGCGGCUCCaGUu -5'
12779 5' -57.3 NC_003387.1 + 1514 0.67 0.52479
Target:  5'- gGCCGAcGUGCAggcucagcACCUCgguGCCGAGGaUCGc -3'
miRNA:   3'- -CGGCU-CGUGU--------UGGAG---CGGCUCC-AGUu -5'
12779 5' -57.3 NC_003387.1 + 47588 0.67 0.514279
Target:  5'- cGCCGAGCGCc-CCUCGUCGcgugcGG-CGAu -3'
miRNA:   3'- -CGGCUCGUGuuGGAGCGGCu----CCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 37805 0.67 0.514279
Target:  5'- cGCCGGuagccGCGCAGCCgucaCGUCGugcagcagcAGGUCGAg -3'
miRNA:   3'- -CGGCU-----CGUGUUGGa---GCGGC---------UCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 9328 0.67 0.514279
Target:  5'- uCCGAGCACAcgaccaGCCgggCGCCGugcAGG-CGAg -3'
miRNA:   3'- cGGCUCGUGU------UGGa--GCGGC---UCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 29716 0.67 0.535382
Target:  5'- cGUCGAGC-CGgugaugcggGCCUUGCCGucGUCGg -3'
miRNA:   3'- -CGGCUCGuGU---------UGGAGCGGCucCAGUu -5'
12779 5' -57.3 NC_003387.1 + 7343 0.66 0.544978
Target:  5'- gGCCGGGCGCAGCUaacCGCCGGcaaaaacucgagcGcGUCGc -3'
miRNA:   3'- -CGGCUCGUGUUGGa--GCGGCU-------------C-CAGUu -5'
12779 5' -57.3 NC_003387.1 + 27340 0.66 0.546048
Target:  5'- cGUCGAGCAgccgcagccccuCGACCUCGCCGcucuuGG-CGc -3'
miRNA:   3'- -CGGCUCGU------------GUUGGAGCGGCu----CCaGUu -5'
12779 5' -57.3 NC_003387.1 + 16010 0.66 0.589308
Target:  5'- gGCCGGGCAg---CUCGaCCG-GGUCGAg -3'
miRNA:   3'- -CGGCUCGUguugGAGC-GGCuCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 12802 0.66 0.588217
Target:  5'- cGCCucGCaACGACCgcagucgUCGCCGGGG-CAGu -3'
miRNA:   3'- -CGGcuCG-UGUUGG-------AGCGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 464 0.66 0.567574
Target:  5'- cGCuCGGGCGCGGCgUUGCCGucaGUCu- -3'
miRNA:   3'- -CG-GCUCGUGUUGgAGCGGCuc-CAGuu -5'
12779 5' -57.3 NC_003387.1 + 5823 0.66 0.566492
Target:  5'- gGCCGuGCACGacgACCUCgggcugcGCCGcAGGUgGGg -3'
miRNA:   3'- -CGGCuCGUGU---UGGAG-------CGGC-UCCAgUU- -5'
12779 5' -57.3 NC_003387.1 + 44374 0.66 0.556781
Target:  5'- uGCCGAacagcgGCACGucggggUCGUCGAGGUCGg -3'
miRNA:   3'- -CGGCU------CGUGUugg---AGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 18951 0.66 0.556781
Target:  5'- aGCCGGGCcaaacgcucGCGGcgccgccguugcCCUUGCCGGGGUg-- -3'
miRNA:   3'- -CGGCUCG---------UGUU------------GGAGCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 49313 0.66 0.550333
Target:  5'- uGCCGGGCACcaucgacagcaGgugcucgaucgggauGCC-CGCCGAGGcCAGc -3'
miRNA:   3'- -CGGCUCGUG-----------U---------------UGGaGCGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 26915 0.66 0.546048
Target:  5'- cGCCGAGCAgGccgccACCgaggcCGCCGAGcggccgagaauGUCGAg -3'
miRNA:   3'- -CGGCUCGUgU-----UGGa----GCGGCUC-----------CAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.