miRNA display CGI


Results 1 - 20 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12779 5' -57.3 NC_003387.1 + 50026 1.08 0.000611
Target:  5'- cGCCGAGCACAACCUCGCCGAGGUCAAg -3'
miRNA:   3'- -CGGCUCGUGUUGGAGCGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 42326 0.85 0.032828
Target:  5'- uGCCGAGCGCcgAACCgUCGCCGAGGUUg- -3'
miRNA:   3'- -CGGCUCGUG--UUGG-AGCGGCUCCAGuu -5'
12779 5' -57.3 NC_003387.1 + 5184 0.84 0.035848
Target:  5'- -aCGAGCACGACCUCGCCGuaacGGUCGc -3'
miRNA:   3'- cgGCUCGUGUUGGAGCGGCu---CCAGUu -5'
12779 5' -57.3 NC_003387.1 + 32671 0.81 0.066042
Target:  5'- cGCCGAGCugAACCUCGCCGcgcacGUCGu -3'
miRNA:   3'- -CGGCUCGugUUGGAGCGGCuc---CAGUu -5'
12779 5' -57.3 NC_003387.1 + 50089 0.8 0.074099
Target:  5'- aCCGAGCACGACacgaUCGCCGAGGcccgCGAg -3'
miRNA:   3'- cGGCUCGUGUUGg---AGCGGCUCCa---GUU- -5'
12779 5' -57.3 NC_003387.1 + 49542 0.8 0.077136
Target:  5'- cCCGAGCaggcucaccccgauuACGGCCUCGCCGAGGUg-- -3'
miRNA:   3'- cGGCUCG---------------UGUUGGAGCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 13173 0.79 0.080752
Target:  5'- gGCCGAGCGCGACCUgGCCGAcGcGaUCGAg -3'
miRNA:   3'- -CGGCUCGUGUUGGAgCGGCU-C-C-AGUU- -5'
12779 5' -57.3 NC_003387.1 + 51441 0.79 0.085501
Target:  5'- cGUCGAgGCGCAucaccgugaacACCUCGCCGGGGUCc- -3'
miRNA:   3'- -CGGCU-CGUGU-----------UGGAGCGGCUCCAGuu -5'
12779 5' -57.3 NC_003387.1 + 13449 0.79 0.090258
Target:  5'- cGUCGAGCAgcuugccCAG-CUCGCCGAGGUCGAa -3'
miRNA:   3'- -CGGCUCGU-------GUUgGAGCGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 26657 0.77 0.113492
Target:  5'- cGCCGGGCGCAGCCUCGCgaaUGuGGUa-- -3'
miRNA:   3'- -CGGCUCGUGUUGGAGCG---GCuCCAguu -5'
12779 5' -57.3 NC_003387.1 + 7806 0.77 0.116722
Target:  5'- gGCCGAGCuGCAacGCCUggcgGCCGAGGUCGc -3'
miRNA:   3'- -CGGCUCG-UGU--UGGAg---CGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 21705 0.76 0.130514
Target:  5'- cGgCGAGCGCGGCCcgCGCCGAccuGGUCGu -3'
miRNA:   3'- -CgGCUCGUGUUGGa-GCGGCU---CCAGUu -5'
12779 5' -57.3 NC_003387.1 + 21670 0.75 0.154039
Target:  5'- gGCCGAGCACGugUUCGCCGAcgcccuGGcCGc -3'
miRNA:   3'- -CGGCUCGUGUugGAGCGGCU------CCaGUu -5'
12779 5' -57.3 NC_003387.1 + 27834 0.75 0.154039
Target:  5'- uGCCGucgguggacagGGCGCAGCCacCGcCCGAGGUCGAg -3'
miRNA:   3'- -CGGC-----------UCGUGUUGGa-GC-GGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 29830 0.75 0.158315
Target:  5'- gGCCGucGCGuCggUCUUGCCGGGGUCAGc -3'
miRNA:   3'- -CGGCu-CGU-GuuGGAGCGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 33944 0.74 0.18629
Target:  5'- gGUCGAGCuuCGGCagCUUGCCGGGGUCGGg -3'
miRNA:   3'- -CGGCUCGu-GUUG--GAGCGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 48525 0.73 0.217958
Target:  5'- gGCCGA-CACGcgguggccgaagcACCgCGCCGAGGUCAc -3'
miRNA:   3'- -CGGCUcGUGU-------------UGGaGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 2688 0.73 0.224349
Target:  5'- -aCGAGCuuGACCUCGgCGAGGUUg- -3'
miRNA:   3'- cgGCUCGugUUGGAGCgGCUCCAGuu -5'
12779 5' -57.3 NC_003387.1 + 34716 0.73 0.230296
Target:  5'- -gCG-GCGCGACCUgGCCGAgcuGGUCAAg -3'
miRNA:   3'- cgGCuCGUGUUGGAgCGGCU---CCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 1614 0.73 0.236376
Target:  5'- gGCCGGGCGCGugugggcaGCCUCGCgCG-GGUUg- -3'
miRNA:   3'- -CGGCUCGUGU--------UGGAGCG-GCuCCAGuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.