miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12779 5' -57.3 NC_003387.1 + 1447 0.73 0.236376
Target:  5'- gGCuCGGGguCGucguCCUCGUCGAGGUCGu -3'
miRNA:   3'- -CG-GCUCguGUu---GGAGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 24720 0.73 0.236376
Target:  5'- cGCCaAGCGCGugCUCGCCGAaaUCGAg -3'
miRNA:   3'- -CGGcUCGUGUugGAGCGGCUccAGUU- -5'
12779 5' -57.3 NC_003387.1 + 156 0.73 0.236376
Target:  5'- cGCCGAGCugGGCCUgcugGCCGAcGG-CAAg -3'
miRNA:   3'- -CGGCUCGugUUGGAg---CGGCU-CCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 13397 0.72 0.255424
Target:  5'- cGCCGcggugaucacAGCACGcCCUCGCCGuuGUCGg -3'
miRNA:   3'- -CGGC----------UCGUGUuGGAGCGGCucCAGUu -5'
12779 5' -57.3 NC_003387.1 + 32249 0.72 0.268811
Target:  5'- gGCCGAcCGCcuGGCCgUCGCCGAGGcCGAc -3'
miRNA:   3'- -CGGCUcGUG--UUGG-AGCGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 42048 0.72 0.268811
Target:  5'- cGCCGAGgcggccgugguCGCAGCCgCGUCGAGGcCGAa -3'
miRNA:   3'- -CGGCUC-----------GUGUUGGaGCGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 34417 0.72 0.268811
Target:  5'- uGCCGGGCGCcACCgccgCgGCCG-GGUCGg -3'
miRNA:   3'- -CGGCUCGUGuUGGa---G-CGGCuCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 25970 0.72 0.275714
Target:  5'- gGCCGAucGCugGggguauGCCgcUCGCCGGGGUCGc -3'
miRNA:   3'- -CGGCU--CGugU------UGG--AGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 49432 0.71 0.282758
Target:  5'- cCCGAGUcgGCGGCCgUGUCGGGGUCGu -3'
miRNA:   3'- cGGCUCG--UGUUGGaGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 20210 0.71 0.287773
Target:  5'- gGCCGGGCgugcacGCAgcggcagucgucgcACCacggCGCCGGGGUCGAc -3'
miRNA:   3'- -CGGCUCG------UGU--------------UGGa---GCGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 8913 0.71 0.289944
Target:  5'- cGCCGAucGUGCAGCaCUCGUCGAGGa--- -3'
miRNA:   3'- -CGGCU--CGUGUUG-GAGCGGCUCCaguu -5'
12779 5' -57.3 NC_003387.1 + 33581 0.71 0.294323
Target:  5'- uGCUGAGCGCGugCgcgacgaagauccCGCCGAGGUg-- -3'
miRNA:   3'- -CGGCUCGUGUugGa------------GCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 24846 0.71 0.297272
Target:  5'- gGCCGGGCuccugcuCGACCgCGCCGGuGUCGAu -3'
miRNA:   3'- -CGGCUCGu------GUUGGaGCGGCUcCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 12300 0.71 0.304743
Target:  5'- gGCCGGGC-CGguucGCCgUCGCCGAcguaGGUCAc -3'
miRNA:   3'- -CGGCUCGuGU----UGG-AGCGGCU----CCAGUu -5'
12779 5' -57.3 NC_003387.1 + 19974 0.71 0.304743
Target:  5'- aUCGAGUugACAGCCcgaaUCGCCGAGGcCAc -3'
miRNA:   3'- cGGCUCG--UGUUGG----AGCGGCUCCaGUu -5'
12779 5' -57.3 NC_003387.1 + 49736 0.71 0.312357
Target:  5'- aUCGAGCAgcGCCUCGUCGAGGcccCGAg -3'
miRNA:   3'- cGGCUCGUguUGGAGCGGCUCCa--GUU- -5'
12779 5' -57.3 NC_003387.1 + 51919 0.71 0.312357
Target:  5'- cGCUucGCGCAAaucagCUUGCCGAGGUCGu -3'
miRNA:   3'- -CGGcuCGUGUUg----GAGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 29677 0.71 0.312357
Target:  5'- cGCCGAcGUcgacguCGACgUgGCCGAGGUCGAg -3'
miRNA:   3'- -CGGCU-CGu-----GUUGgAgCGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 37713 0.71 0.312357
Target:  5'- cGCCGAcccGCGCGACaa-GCCGAGGgcggCAAc -3'
miRNA:   3'- -CGGCU---CGUGUUGgagCGGCUCCa---GUU- -5'
12779 5' -57.3 NC_003387.1 + 23164 0.7 0.344248
Target:  5'- aGUCGAGCACccacACCUCGUCGcucaugcccGGUCGAc -3'
miRNA:   3'- -CGGCUCGUGu---UGGAGCGGCu--------CCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.