miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12779 5' -57.3 NC_003387.1 + 18683 0.69 0.396332
Target:  5'- cGUCGAGUACAccgggguggggcGCCgUGCCGAGG-CAGu -3'
miRNA:   3'- -CGGCUCGUGU------------UGGaGCGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 24548 0.7 0.36105
Target:  5'- gGCCGAGCGaAACUgUCGCCGGGuUCGGg -3'
miRNA:   3'- -CGGCUCGUgUUGG-AGCGGCUCcAGUU- -5'
12779 5' -57.3 NC_003387.1 + 156 0.73 0.236376
Target:  5'- cGCCGAGCugGGCCUgcugGCCGAcGG-CAAg -3'
miRNA:   3'- -CGGCUCGugUUGGAg---CGGCU-CCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 13173 0.79 0.080752
Target:  5'- gGCCGAGCGCGACCUgGCCGAcGcGaUCGAg -3'
miRNA:   3'- -CGGCUCGUGUUGGAgCGGCU-C-C-AGUU- -5'
12779 5' -57.3 NC_003387.1 + 4422 0.67 0.483289
Target:  5'- cGCCGAGCugGGCaaggcguUCGCCGAGccCGc -3'
miRNA:   3'- -CGGCUCGugUUGg------AGCGGCUCcaGUu -5'
12779 5' -57.3 NC_003387.1 + 19741 0.68 0.463136
Target:  5'- uGCCGGGUACGaaggucggcgGCCUCGCCGGa----- -3'
miRNA:   3'- -CGGCUCGUGU----------UGGAGCGGCUccaguu -5'
12779 5' -57.3 NC_003387.1 + 5426 0.7 0.352579
Target:  5'- cGCCGAGgACAA-CUCGaCCGAGGg--- -3'
miRNA:   3'- -CGGCUCgUGUUgGAGC-GGCUCCaguu -5'
12779 5' -57.3 NC_003387.1 + 49542 0.8 0.077136
Target:  5'- cCCGAGCaggcucaccccgauuACGGCCUCGCCGAGGUg-- -3'
miRNA:   3'- cGGCUCG---------------UGUUGGAGCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 28459 0.68 0.453225
Target:  5'- -aCGAGCuggcgGCGGCC-C-CCGAGGUCAAg -3'
miRNA:   3'- cgGCUCG-----UGUUGGaGcGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 50089 0.8 0.074099
Target:  5'- aCCGAGCACGACacgaUCGCCGAGGcccgCGAg -3'
miRNA:   3'- cGGCUCGUGUUGg---AGCGGCUCCa---GUU- -5'
12779 5' -57.3 NC_003387.1 + 6790 0.7 0.352579
Target:  5'- gGCCGAGCGCGACauggUCGCCcugcGGcUCAAg -3'
miRNA:   3'- -CGGCUCGUGUUGg---AGCGGcu--CC-AGUU- -5'
12779 5' -57.3 NC_003387.1 + 26934 0.69 0.414786
Target:  5'- cGCCGGGCugG-CCU-GUCGGcGGUCAAu -3'
miRNA:   3'- -CGGCUCGugUuGGAgCGGCU-CCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 29677 0.71 0.312357
Target:  5'- cGCCGAcGUcgacguCGACgUgGCCGAGGUCGAg -3'
miRNA:   3'- -CGGCU-CGu-----GUUGgAgCGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 24720 0.73 0.236376
Target:  5'- cGCCaAGCGCGugCUCGCCGAaaUCGAg -3'
miRNA:   3'- -CGGcUCGUGUugGAGCGGCUccAGUU- -5'
12779 5' -57.3 NC_003387.1 + 48525 0.73 0.217958
Target:  5'- gGCCGA-CACGcgguggccgaagcACCgCGCCGAGGUCAc -3'
miRNA:   3'- -CGGCUcGUGU-------------UGGaGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 7806 0.77 0.116722
Target:  5'- gGCCGAGCuGCAacGCCUggcgGCCGAGGUCGc -3'
miRNA:   3'- -CGGCUCG-UGU--UGGAg---CGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 47758 0.67 0.493523
Target:  5'- uGCgCGAGCACGGCCUgaCCGGcuGGUCu- -3'
miRNA:   3'- -CG-GCUCGUGUUGGAgcGGCU--CCAGuu -5'
12779 5' -57.3 NC_003387.1 + 4461 0.67 0.483289
Target:  5'- gGCCGAGC-CGACCgccgagccCGCCGcgaAGGcCGAg -3'
miRNA:   3'- -CGGCUCGuGUUGGa-------GCGGC---UCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 27197 0.68 0.463136
Target:  5'- gGCgCGAGCGCAACCggCGCaagucugcGGUCGAc -3'
miRNA:   3'- -CG-GCUCGUGUUGGa-GCGgcu-----CCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 25929 0.68 0.463136
Target:  5'- aCC-AGCGCGGCCUCGUCGAgcGGUg-- -3'
miRNA:   3'- cGGcUCGUGUUGGAGCGGCU--CCAguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.