miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12779 5' -57.3 NC_003387.1 + 44374 0.66 0.556781
Target:  5'- uGCCGAacagcgGCACGucggggUCGUCGAGGUCGg -3'
miRNA:   3'- -CGGCU------CGUGUugg---AGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 5823 0.66 0.566492
Target:  5'- gGCCGuGCACGacgACCUCgggcugcGCCGcAGGUgGGg -3'
miRNA:   3'- -CGGCuCGUGU---UGGAG-------CGGC-UCCAgUU- -5'
12779 5' -57.3 NC_003387.1 + 464 0.66 0.567574
Target:  5'- cGCuCGGGCGCGGCgUUGCCGucaGUCu- -3'
miRNA:   3'- -CG-GCUCGUGUUGgAGCGGCuc-CAGuu -5'
12779 5' -57.3 NC_003387.1 + 12802 0.66 0.588217
Target:  5'- cGCCucGCaACGACCgcagucgUCGCCGGGG-CAGu -3'
miRNA:   3'- -CGGcuCG-UGUUGG-------AGCGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 7343 0.66 0.544978
Target:  5'- gGCCGGGCGCAGCUaacCGCCGGcaaaaacucgagcGcGUCGc -3'
miRNA:   3'- -CGGCUCGUGUUGGa--GCGGCU-------------C-CAGUu -5'
12779 5' -57.3 NC_003387.1 + 16010 0.66 0.589308
Target:  5'- gGCCGGGCAg---CUCGaCCG-GGUCGAg -3'
miRNA:   3'- -CGGCUCGUguugGAGC-GGCuCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 52040 0.66 0.589308
Target:  5'- cGUgGcGCGCGACCUCGCUaAGcGUCGc -3'
miRNA:   3'- -CGgCuCGUGUUGGAGCGGcUC-CAGUu -5'
12779 5' -57.3 NC_003387.1 + 44899 0.67 0.503854
Target:  5'- cGCCGGGCGCGcuauccguaucGCgUCGCCGggcuGGGgCGAc -3'
miRNA:   3'- -CGGCUCGUGU-----------UGgAGCGGC----UCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 13334 0.67 0.52479
Target:  5'- cGCCaGGCGCAcgagcACCUCGUacaccuCGGGGUUAu -3'
miRNA:   3'- -CGGcUCGUGU-----UGGAGCG------GCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 52316 0.67 0.483289
Target:  5'- cGCC-AGCACAGCCUCG--GGGGUgCGAg -3'
miRNA:   3'- -CGGcUCGUGUUGGAGCggCUCCA-GUU- -5'
12779 5' -57.3 NC_003387.1 + 25014 0.67 0.535382
Target:  5'- gGCUGAuauGCAgCGGCCU-GUCGGGGUCGg -3'
miRNA:   3'- -CGGCU---CGU-GUUGGAgCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 8315 0.67 0.535382
Target:  5'- -gCGAGCACAGCgUCaGCCGcGG-CGAg -3'
miRNA:   3'- cgGCUCGUGUUGgAG-CGGCuCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 29716 0.67 0.535382
Target:  5'- cGUCGAGC-CGgugaugcggGCCUUGCCGucGUCGg -3'
miRNA:   3'- -CGGCUCGuGU---------UGGAGCGGCucCAGUu -5'
12779 5' -57.3 NC_003387.1 + 51151 0.67 0.502817
Target:  5'- cGCCaGGGCGuuaggcgcuucgcCGuCCUCgggGCCGAGGUCGAa -3'
miRNA:   3'- -CGG-CUCGU-------------GUuGGAG---CGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 33739 0.67 0.493523
Target:  5'- cGCCGccAGCucguCGAUgCUCGCCGGGGUg-- -3'
miRNA:   3'- -CGGC--UCGu---GUUG-GAGCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 31018 0.67 0.493523
Target:  5'- gGUCG-GCGCGggccGCgCUCGCCGAGG-CGg -3'
miRNA:   3'- -CGGCuCGUGU----UG-GAGCGGCUCCaGUu -5'
12779 5' -57.3 NC_003387.1 + 30930 0.67 0.493523
Target:  5'- cGCCGAGCu--GCC--GCCGcGGUCAAc -3'
miRNA:   3'- -CGGCUCGuguUGGagCGGCuCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 30247 0.67 0.493523
Target:  5'- gGCCGGGUcguCGGggUCggCGCCGGGGUCGGg -3'
miRNA:   3'- -CGGCUCGu--GUU--GGa-GCGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 45979 0.67 0.493523
Target:  5'- uGCCGAGggUGGCCUgGUCGAGGa--- -3'
miRNA:   3'- -CGGCUCguGUUGGAgCGGCUCCaguu -5'
12779 5' -57.3 NC_003387.1 + 3678 0.67 0.493523
Target:  5'- cGCCaGcAGCGCAACCgucgaGCCGgugaugcucAGGUCGAu -3'
miRNA:   3'- -CGG-C-UCGUGUUGGag---CGGC---------UCCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.