miRNA display CGI


Results 1 - 20 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12779 5' -57.3 NC_003387.1 + 52040 0.66 0.589308
Target:  5'- cGUgGcGCGCGACCUCGCUaAGcGUCGc -3'
miRNA:   3'- -CGgCuCGUGUUGGAGCGGcUC-CAGUu -5'
12779 5' -57.3 NC_003387.1 + 2601 0.66 0.567574
Target:  5'- gGCCGcAGUACGcCCUCGaaaCGuGGGUCGc -3'
miRNA:   3'- -CGGC-UCGUGUuGGAGCg--GC-UCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 1782 0.66 0.567574
Target:  5'- cCCGAGCugAaaGCC-CGCa-AGGUCAAg -3'
miRNA:   3'- cGGCUCGugU--UGGaGCGgcUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 43203 0.66 0.589308
Target:  5'- gGCCGGGUACGcgGCgaUCGgCGAGGUg-- -3'
miRNA:   3'- -CGGCUCGUGU--UGg-AGCgGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 3292 0.66 0.546048
Target:  5'- cCCGA-CACGGCCgccgacucgggCGCCGAGGUg-- -3'
miRNA:   3'- cGGCUcGUGUUGGa----------GCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 35643 0.66 0.546048
Target:  5'- gGCCGGGCGggcacuggcCGACCUCGaCCGcGGG-CGGu -3'
miRNA:   3'- -CGGCUCGU---------GUUGGAGC-GGC-UCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 617 0.66 0.556781
Target:  5'- gGCCGAGCagggcgaggGCAGCgUCGCCGccgcGG-CAGc -3'
miRNA:   3'- -CGGCUCG---------UGUUGgAGCGGCu---CCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 48399 0.66 0.556781
Target:  5'- gGCCGGGCGCAGCCUgGgCaaccaGuGGUaCAGc -3'
miRNA:   3'- -CGGCUCGUGUUGGAgC-Gg----CuCCA-GUU- -5'
12779 5' -57.3 NC_003387.1 + 24636 0.66 0.556781
Target:  5'- cCCGA-CGC-ACCUCGCCcugcugcgcGAGGUCGc -3'
miRNA:   3'- cGGCUcGUGuUGGAGCGG---------CUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 35999 0.66 0.546048
Target:  5'- --aGGGCACGAUCgaCGgCGAGGUCGu -3'
miRNA:   3'- cggCUCGUGUUGGa-GCgGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 7343 0.66 0.544978
Target:  5'- gGCCGGGCGCAGCUaacCGCCGGcaaaaacucgagcGcGUCGc -3'
miRNA:   3'- -CGGCUCGUGUUGGa--GCGGCU-------------C-CAGUu -5'
12779 5' -57.3 NC_003387.1 + 27340 0.66 0.546048
Target:  5'- cGUCGAGCAgccgcagccccuCGACCUCGCCGcucuuGG-CGc -3'
miRNA:   3'- -CGGCUCGU------------GUUGGAGCGGCu----CCaGUu -5'
12779 5' -57.3 NC_003387.1 + 16010 0.66 0.589308
Target:  5'- gGCCGGGCAg---CUCGaCCG-GGUCGAg -3'
miRNA:   3'- -CGGCUCGUguugGAGC-GGCuCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 12802 0.66 0.588217
Target:  5'- cGCCucGCaACGACCgcagucgUCGCCGGGG-CAGu -3'
miRNA:   3'- -CGGcuCG-UGUUGG-------AGCGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 464 0.66 0.567574
Target:  5'- cGCuCGGGCGCGGCgUUGCCGucaGUCu- -3'
miRNA:   3'- -CG-GCUCGUGUUGgAGCGGCuc-CAGuu -5'
12779 5' -57.3 NC_003387.1 + 5823 0.66 0.566492
Target:  5'- gGCCGuGCACGacgACCUCgggcugcGCCGcAGGUgGGg -3'
miRNA:   3'- -CGGCuCGUGU---UGGAG-------CGGC-UCCAgUU- -5'
12779 5' -57.3 NC_003387.1 + 44374 0.66 0.556781
Target:  5'- uGCCGAacagcgGCACGucggggUCGUCGAGGUCGg -3'
miRNA:   3'- -CGGCU------CGUGUugg---AGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 18951 0.66 0.556781
Target:  5'- aGCCGGGCcaaacgcucGCGGcgccgccguugcCCUUGCCGGGGUg-- -3'
miRNA:   3'- -CGGCUCG---------UGUU------------GGAGCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 49313 0.66 0.550333
Target:  5'- uGCCGGGCACcaucgacagcaGgugcucgaucgggauGCC-CGCCGAGGcCAGc -3'
miRNA:   3'- -CGGCUCGUG-----------U---------------UGGaGCGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 26915 0.66 0.546048
Target:  5'- cGCCGAGCAgGccgccACCgaggcCGCCGAGcggccgagaauGUCGAg -3'
miRNA:   3'- -CGGCUCGUgU-----UGGa----GCGGCUC-----------CAGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.