miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12779 5' -57.3 NC_003387.1 + 52547 0.68 0.424209
Target:  5'- aGUCGAGCACcgUCUUGCCGucGGcCAGc -3'
miRNA:   3'- -CGGCUCGUGuuGGAGCGGCu-CCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 52316 0.67 0.483289
Target:  5'- cGCC-AGCACAGCCUCG--GGGGUgCGAg -3'
miRNA:   3'- -CGGcUCGUGUUGGAGCggCUCCA-GUU- -5'
12779 5' -57.3 NC_003387.1 + 52040 0.66 0.589308
Target:  5'- cGUgGcGCGCGACCUCGCUaAGcGUCGc -3'
miRNA:   3'- -CGgCuCGUGUUGGAGCGGcUC-CAGUu -5'
12779 5' -57.3 NC_003387.1 + 51919 0.71 0.312357
Target:  5'- cGCUucGCGCAAaucagCUUGCCGAGGUCGu -3'
miRNA:   3'- -CGGcuCGUGUUg----GAGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 51596 0.69 0.378415
Target:  5'- cGCCGAGCAC-ACCgugCGCCcuAGcGUCGc -3'
miRNA:   3'- -CGGCUCGUGuUGGa--GCGGc-UC-CAGUu -5'
12779 5' -57.3 NC_003387.1 + 51441 0.79 0.085501
Target:  5'- cGUCGAgGCGCAucaccgugaacACCUCGCCGGGGUCc- -3'
miRNA:   3'- -CGGCU-CGUGU-----------UGGAGCGGCUCCAGuu -5'
12779 5' -57.3 NC_003387.1 + 51334 0.67 0.531136
Target:  5'- uUCGAGCGCGACCccgacccgcugagCGCCGAcGG-CGAg -3'
miRNA:   3'- cGGCUCGUGUUGGa------------GCGGCU-CCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 51151 0.67 0.502817
Target:  5'- cGCCaGGGCGuuaggcgcuucgcCGuCCUCgggGCCGAGGUCGAa -3'
miRNA:   3'- -CGG-CUCGU-------------GUuGGAG---CGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 50726 0.67 0.514279
Target:  5'- gGUCGAGCGuuACCUcgaCGCCGucgcguuucAGGUCAAg -3'
miRNA:   3'- -CGGCUCGUguUGGA---GCGGC---------UCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 50460 0.67 0.514279
Target:  5'- cGUCGAGC-CGACCcCgGCCcgcGAGGUCGu -3'
miRNA:   3'- -CGGCUCGuGUUGGaG-CGG---CUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 50089 0.8 0.074099
Target:  5'- aCCGAGCACGACacgaUCGCCGAGGcccgCGAg -3'
miRNA:   3'- cGGCUCGUGUUGg---AGCGGCUCCa---GUU- -5'
12779 5' -57.3 NC_003387.1 + 50026 1.08 0.000611
Target:  5'- cGCCGAGCACAACCUCGCCGAGGUCAAg -3'
miRNA:   3'- -CGGCUCGUGUUGGAGCGGCUCCAGUU- -5'
12779 5' -57.3 NC_003387.1 + 49736 0.71 0.312357
Target:  5'- aUCGAGCAgcGCCUCGUCGAGGcccCGAg -3'
miRNA:   3'- cGGCUCGUguUGGAGCGGCUCCa--GUU- -5'
12779 5' -57.3 NC_003387.1 + 49542 0.8 0.077136
Target:  5'- cCCGAGCaggcucaccccgauuACGGCCUCGCCGAGGUg-- -3'
miRNA:   3'- cGGCUCG---------------UGUUGGAGCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 49432 0.71 0.282758
Target:  5'- cCCGAGUcgGCGGCCgUGUCGGGGUCGu -3'
miRNA:   3'- cGGCUCG--UGUUGGaGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 49313 0.66 0.550333
Target:  5'- uGCCGGGCACcaucgacagcaGgugcucgaucgggauGCC-CGCCGAGGcCAGc -3'
miRNA:   3'- -CGGCUCGUG-----------U---------------UGGaGCGGCUCCaGUU- -5'
12779 5' -57.3 NC_003387.1 + 49239 0.68 0.443432
Target:  5'- gGCCGAGCgGCuGCUcgaCGCCGGGGUg-- -3'
miRNA:   3'- -CGGCUCG-UGuUGGa--GCGGCUCCAguu -5'
12779 5' -57.3 NC_003387.1 + 48525 0.73 0.217958
Target:  5'- gGCCGA-CACGcgguggccgaagcACCgCGCCGAGGUCAc -3'
miRNA:   3'- -CGGCUcGUGU-------------UGGaGCGGCUCCAGUu -5'
12779 5' -57.3 NC_003387.1 + 48399 0.66 0.556781
Target:  5'- gGCCGGGCGCAGCCUgGgCaaccaGuGGUaCAGc -3'
miRNA:   3'- -CGGCUCGUGUUGGAgC-Gg----CuCCA-GUU- -5'
12779 5' -57.3 NC_003387.1 + 47758 0.67 0.493523
Target:  5'- uGCgCGAGCACGGCCUgaCCGGcuGGUCu- -3'
miRNA:   3'- -CG-GCUCGUGUUGGAgcGGCU--CCAGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.