miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12780 3' -49.7 NC_003387.1 + 18197 0.7 0.823601
Target:  5'- gGGUCGAcGggCAgcCCGAG--GAUCGCg -3'
miRNA:   3'- gCCAGCUuCaaGU--GGCUCaaCUAGCG- -5'
12780 3' -49.7 NC_003387.1 + 15945 0.67 0.941414
Target:  5'- gCGcGUCGGccagCGCCGAGUgccGUCGCu -3'
miRNA:   3'- -GC-CAGCUucaaGUGGCUCAac-UAGCG- -5'
12780 3' -49.7 NC_003387.1 + 15271 0.67 0.930615
Target:  5'- uCGGUCGA----CGCCGAGgaGAugUUGCa -3'
miRNA:   3'- -GCCAGCUucaaGUGGCUCaaCU--AGCG- -5'
12780 3' -49.7 NC_003387.1 + 13502 0.66 0.959581
Target:  5'- cCGG-CG-GGUUCGCCG-GUggaGUCGCu -3'
miRNA:   3'- -GCCaGCuUCAAGUGGCuCAac-UAGCG- -5'
12780 3' -49.7 NC_003387.1 + 12049 0.66 0.95106
Target:  5'- -cGUCGAcaAGUUCACCGGcGUggUGAauuUCGUc -3'
miRNA:   3'- gcCAGCU--UCAAGUGGCU-CA--ACU---AGCG- -5'
12780 3' -49.7 NC_003387.1 + 11046 0.66 0.963434
Target:  5'- gGGUCG-GGUUgaCGCCGAaccacaGGUCGCa -3'
miRNA:   3'- gCCAGCuUCAA--GUGGCUcaa---CUAGCG- -5'
12780 3' -49.7 NC_003387.1 + 10945 0.67 0.941414
Target:  5'- gCGGUCGAcucugAGacuuucCGCCGGG-UGAUCGg -3'
miRNA:   3'- -GCCAGCU-----UCaa----GUGGCUCaACUAGCg -5'
12780 3' -49.7 NC_003387.1 + 10252 0.71 0.774136
Target:  5'- aCGG-CG-GGaUCGCCcGGUUGGUCGCg -3'
miRNA:   3'- -GCCaGCuUCaAGUGGcUCAACUAGCG- -5'
12780 3' -49.7 NC_003387.1 + 5150 0.67 0.941414
Target:  5'- uCGGUCGAGcUUCACCGAcacgcGAgUGCg -3'
miRNA:   3'- -GCCAGCUUcAAGUGGCUcaa--CUaGCG- -5'
12780 3' -49.7 NC_003387.1 + 2750 0.68 0.91865
Target:  5'- cCGGUgaacgugcgCGAGG-UCACCGAcgUGAUCGa -3'
miRNA:   3'- -GCCA---------GCUUCaAGUGGCUcaACUAGCg -5'
12780 3' -49.7 NC_003387.1 + 1393 0.67 0.936159
Target:  5'- gGGUCGggGUcgCGCuCGaAGUUGugcgaggCGCc -3'
miRNA:   3'- gCCAGCuuCAa-GUG-GC-UCAACua-----GCG- -5'
12780 3' -49.7 NC_003387.1 + 1247 0.69 0.883695
Target:  5'- cCGGUCuGgcGUUCGCgGuGUcGGUUGCg -3'
miRNA:   3'- -GCCAG-CuuCAAGUGgCuCAaCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.