Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12780 | 5' | -59.6 | NC_003387.1 | + | 12290 | 0.69 | 0.31932 |
Target: 5'- gGCcGGAUCAGCGGGcCGGg--CACCGg -3' miRNA: 3'- -CGuCCUAGUCGCCCcGCUggaGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 7455 | 0.69 | 0.326987 |
Target: 5'- aCGGGGUCGGCGuGGCGAUCcauuccaGCCGc -3' miRNA: 3'- cGUCCUAGUCGCcCCGCUGGag-----UGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 28048 | 0.69 | 0.33795 |
Target: 5'- uCGGGAuagcgcgagucacccUCGGCGcuGGCGACCUCGCg- -3' miRNA: 3'- cGUCCU---------------AGUCGCc-CCGCUGGAGUGgc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 31009 | 0.69 | 0.340334 |
Target: 5'- uCAGGAUCGGgccgagcgugcgcCGGGGCGGCggccagcacggCACCGg -3' miRNA: 3'- cGUCCUAGUC-------------GCCCCGCUGga---------GUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 11263 | 0.69 | 0.342729 |
Target: 5'- gGCGGGggCAGuCaGGGCGGCgUCaggGCCGc -3' miRNA: 3'- -CGUCCuaGUC-GcCCCGCUGgAG---UGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 19456 | 0.69 | 0.342729 |
Target: 5'- uGCGGGcgcguGUCAGUGuGGGCG-CCgaggcCACCGc -3' miRNA: 3'- -CGUCC-----UAGUCGC-CCCGCuGGa----GUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 32843 | 0.68 | 0.35901 |
Target: 5'- cGCGGG----GCGGGGCGguuccGCgUCGCCGa -3' miRNA: 3'- -CGUCCuaguCGCCCCGC-----UGgAGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 41995 | 0.68 | 0.35901 |
Target: 5'- cGCGGuGcucaagCGGUGGGGCcGCCUgGCCGu -3' miRNA: 3'- -CGUC-Cua----GUCGCCCCGcUGGAgUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 22030 | 0.68 | 0.375824 |
Target: 5'- cGCGGcGUCgacauuccgugGGCGGuGGCGGCgaUCACCGg -3' miRNA: 3'- -CGUCcUAG-----------UCGCC-CCGCUGg-AGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 19741 | 0.68 | 0.375824 |
Target: 5'- uGCcGGGUaCGaaGGucGGCGGCCUCGCCGg -3' miRNA: 3'- -CGuCCUA-GUcgCC--CCGCUGGAGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 18901 | 0.68 | 0.392283 |
Target: 5'- uCGGGAUCuugcccAGCGGGaugcccuGCG-CCUCAUCGg -3' miRNA: 3'- cGUCCUAG------UCGCCC-------CGCuGGAGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 25273 | 0.67 | 0.408302 |
Target: 5'- gGCAGGucgcacaucgggcaGUCAGCcaGGGCGACgUCGgCGc -3' miRNA: 3'- -CGUCC--------------UAGUCGc-CCCGCUGgAGUgGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 36576 | 0.67 | 0.419206 |
Target: 5'- uCGGGAUCGaCGGGGCGguGCCcagcagcUUGCCGa -3' miRNA: 3'- cGUCCUAGUcGCCCCGC--UGG-------AGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 21633 | 0.67 | 0.420122 |
Target: 5'- gGCAGGcgucgagcGUCAgcucgucgaccGCGGcGGCGGCCgagcacguguUCGCCGa -3' miRNA: 3'- -CGUCC--------UAGU-----------CGCC-CCGCUGG----------AGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 43822 | 0.67 | 0.42104 |
Target: 5'- uGCAcGAUCGGCGaGGGCGagGCCgaggucggggcggugCACCa -3' miRNA: 3'- -CGUcCUAGUCGC-CCCGC--UGGa--------------GUGGc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 20063 | 0.67 | 0.423801 |
Target: 5'- gGUAGGGcUCAGUGGcacaaggugaacgacGGCGACCgcucugugaUCGCCa -3' miRNA: 3'- -CGUCCU-AGUCGCC---------------CCGCUGG---------AGUGGc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 10121 | 0.67 | 0.429355 |
Target: 5'- gGCgAGGGUCaccgGGCGGGGCucGGCCUUcucCCa -3' miRNA: 3'- -CG-UCCUAG----UCGCCCCG--CUGGAGu--GGc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 51705 | 0.67 | 0.438705 |
Target: 5'- uCAaGAUguGCGGGGCGAUCUUGUCGc -3' miRNA: 3'- cGUcCUAguCGCCCCGCUGGAGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 16480 | 0.67 | 0.448171 |
Target: 5'- aGCAGGG-CAGCGGGuCGGCgUaCACgGu -3' miRNA: 3'- -CGUCCUaGUCGCCCcGCUGgA-GUGgC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 50946 | 0.67 | 0.448171 |
Target: 5'- uGCGGGcuuUCAGCucGGGCG-CCagCGCCGc -3' miRNA: 3'- -CGUCCu--AGUCGc-CCCGCuGGa-GUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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