miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12780 5' -59.6 NC_003387.1 + 49855 1.11 0.000296
Target:  5'- aGCAGGAUCAGCGGGGCGACCUCACCGa -3'
miRNA:   3'- -CGUCCUAGUCGCCCCGCUGGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 36780 0.79 0.072917
Target:  5'- uGCAGGcgcgaGUCGGCcGGGCGGCCuucUCACCGa -3'
miRNA:   3'- -CGUCC-----UAGUCGcCCCGCUGG---AGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 52590 0.74 0.144804
Target:  5'- gGCGcGGAUC-GCGaGGGCGACCgCAUCGa -3'
miRNA:   3'- -CGU-CCUAGuCGC-CCCGCUGGaGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 51503 0.74 0.146365
Target:  5'- aGCAGGAUCAGCGGguuaGGCG-CCgcguucgucgcgggCACCa -3'
miRNA:   3'- -CGUCCUAGUCGCC----CCGCuGGa-------------GUGGc -5'
12780 5' -59.6 NC_003387.1 + 10501 0.74 0.152763
Target:  5'- aGCAaGAUCAGCGGGGCGcucGgCUCGgCGa -3'
miRNA:   3'- -CGUcCUAGUCGCCCCGC---UgGAGUgGC- -5'
12780 5' -59.6 NC_003387.1 + 35147 0.74 0.161116
Target:  5'- uGCAGGucgacCAGCGGGGCGuUgUCGCCc -3'
miRNA:   3'- -CGUCCua---GUCGCCCCGCuGgAGUGGc -5'
12780 5' -59.6 NC_003387.1 + 31015 0.73 0.174417
Target:  5'- cCAGG-UCGGCGcGGGCcGCgCUCGCCGa -3'
miRNA:   3'- cGUCCuAGUCGC-CCCGcUG-GAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 31158 0.73 0.174417
Target:  5'- uGCAGGAUCAGCucGGUuGCCUCgguGCCGg -3'
miRNA:   3'- -CGUCCUAGUCGccCCGcUGGAG---UGGC- -5'
12780 5' -59.6 NC_003387.1 + 35411 0.72 0.193167
Target:  5'- cGCAGG-UCAGCGGugugauuGGCGGaUUCGCCGg -3'
miRNA:   3'- -CGUCCuAGUCGCC-------CCGCUgGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 15914 0.71 0.231841
Target:  5'- cGCAGGAUCGugaagcacgucGCGGuGGCGugCgcgucggccagCGCCGa -3'
miRNA:   3'- -CGUCCUAGU-----------CGCC-CCGCugGa----------GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 3939 0.71 0.243856
Target:  5'- cGCGGcGAUCAGCGGcGaGCuGGCUgCGCCGa -3'
miRNA:   3'- -CGUC-CUAGUCGCC-C-CG-CUGGaGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 46713 0.71 0.243856
Target:  5'- --uGGAUgAGCGaGGCGACCUCGgCGc -3'
miRNA:   3'- cguCCUAgUCGCcCCGCUGGAGUgGC- -5'
12780 5' -59.6 NC_003387.1 + 29214 0.71 0.256384
Target:  5'- uCGGGGUCGGCGcGGuuGGCCgggCACCa -3'
miRNA:   3'- cGUCCUAGUCGC-CCcgCUGGa--GUGGc -5'
12780 5' -59.6 NC_003387.1 + 44284 0.71 0.256384
Target:  5'- cGCAGG-UCAGC-GGGUGugCUCgaguuuuuGCCGg -3'
miRNA:   3'- -CGUCCuAGUCGcCCCGCugGAG--------UGGC- -5'
12780 5' -59.6 NC_003387.1 + 43212 0.7 0.276158
Target:  5'- cGCGGcGAUCGGCGaGGUGACg-CACCa -3'
miRNA:   3'- -CGUC-CUAGUCGCcCCGCUGgaGUGGc -5'
12780 5' -59.6 NC_003387.1 + 25164 0.69 0.304391
Target:  5'- cGCAGGuucggcUCGGCGcGGUGGCCccggCGCCGc -3'
miRNA:   3'- -CGUCCu-----AGUCGCcCCGCUGGa---GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 15104 0.69 0.304391
Target:  5'- cGC-GGAUCGGCgucaacGGGGCG-CCUgACCc -3'
miRNA:   3'- -CGuCCUAGUCG------CCCCGCuGGAgUGGc -5'
12780 5' -59.6 NC_003387.1 + 9233 0.69 0.304391
Target:  5'- gGUGGGggC-GCGGGGUG-UCUCACCa -3'
miRNA:   3'- -CGUCCuaGuCGCCCCGCuGGAGUGGc -5'
12780 5' -59.6 NC_003387.1 + 2198 0.69 0.311788
Target:  5'- cGCGGGcUCAG-GGGuGCcucGugCUCGCCGg -3'
miRNA:   3'- -CGUCCuAGUCgCCC-CG---CugGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 34040 0.69 0.311788
Target:  5'- cGCAccuGGUCGGCguguGGGGCGGCCUaagCGCCc -3'
miRNA:   3'- -CGUc--CUAGUCG----CCCCGCUGGA---GUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.