Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12780 | 5' | -59.6 | NC_003387.1 | + | 10501 | 0.74 | 0.152763 |
Target: 5'- aGCAaGAUCAGCGGGGCGcucGgCUCGgCGa -3' miRNA: 3'- -CGUcCUAGUCGCCCCGC---UgGAGUgGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 16480 | 0.67 | 0.448171 |
Target: 5'- aGCAGGG-CAGCGGGuCGGCgUaCACgGu -3' miRNA: 3'- -CGUCCUaGUCGCCCcGCUGgA-GUGgC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 51303 | 0.66 | 0.457749 |
Target: 5'- cCAGcucGUCGGCGGcGGCG-CCUCGCa- -3' miRNA: 3'- cGUCc--UAGUCGCC-CCGCuGGAGUGgc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 45620 | 0.66 | 0.491101 |
Target: 5'- uGCAGGAgUCGGCGuacGGCGaggcgaagaucggccGCCUggCGCCGa -3' miRNA: 3'- -CGUCCU-AGUCGCc--CCGC---------------UGGA--GUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 15104 | 0.69 | 0.304391 |
Target: 5'- cGC-GGAUCGGCgucaacGGGGCG-CCUgACCc -3' miRNA: 3'- -CGuCCUAGUCG------CCCCGCuGGAgUGGc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 25164 | 0.69 | 0.304391 |
Target: 5'- cGCAGGuucggcUCGGCGcGGUGGCCccggCGCCGc -3' miRNA: 3'- -CGUCCu-----AGUCGCcCCGCUGGa---GUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 12290 | 0.69 | 0.31932 |
Target: 5'- gGCcGGAUCAGCGGGcCGGg--CACCGg -3' miRNA: 3'- -CGuCCUAGUCGCCCcGCUggaGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 31009 | 0.69 | 0.340334 |
Target: 5'- uCAGGAUCGGgccgagcgugcgcCGGGGCGGCggccagcacggCACCGg -3' miRNA: 3'- cGUCCUAGUC-------------GCCCCGCUGga---------GUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 32843 | 0.68 | 0.35901 |
Target: 5'- cGCGGG----GCGGGGCGguuccGCgUCGCCGa -3' miRNA: 3'- -CGUCCuaguCGCCCCGC-----UGgAGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 20063 | 0.67 | 0.423801 |
Target: 5'- gGUAGGGcUCAGUGGcacaaggugaacgacGGCGACCgcucugugaUCGCCa -3' miRNA: 3'- -CGUCCU-AGUCGCC---------------CCGCUGG---------AGUGGc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 22030 | 0.68 | 0.375824 |
Target: 5'- cGCGGcGUCgacauuccgugGGCGGuGGCGGCgaUCACCGg -3' miRNA: 3'- -CGUCcUAG-----------UCGCC-CCGCUGg-AGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 41995 | 0.68 | 0.35901 |
Target: 5'- cGCGGuGcucaagCGGUGGGGCcGCCUgGCCGu -3' miRNA: 3'- -CGUC-Cua----GUCGCCCCGcUGGAgUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 31158 | 0.73 | 0.174417 |
Target: 5'- uGCAGGAUCAGCucGGUuGCCUCgguGCCGg -3' miRNA: 3'- -CGUCCUAGUCGccCCGcUGGAG---UGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 21633 | 0.67 | 0.420122 |
Target: 5'- gGCAGGcgucgagcGUCAgcucgucgaccGCGGcGGCGGCCgagcacguguUCGCCGa -3' miRNA: 3'- -CGUCC--------UAGU-----------CGCC-CCGCUGG----------AGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 43212 | 0.7 | 0.276158 |
Target: 5'- cGCGGcGAUCGGCGaGGUGACg-CACCa -3' miRNA: 3'- -CGUC-CUAGUCGCcCCGCUGgaGUGGc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 19456 | 0.69 | 0.342729 |
Target: 5'- uGCGGGcgcguGUCAGUGuGGGCG-CCgaggcCACCGc -3' miRNA: 3'- -CGUCC-----UAGUCGC-CCCGCuGGa----GUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 43822 | 0.67 | 0.42104 |
Target: 5'- uGCAcGAUCGGCGaGGGCGagGCCgaggucggggcggugCACCa -3' miRNA: 3'- -CGUcCUAGUCGC-CCCGC--UGGa--------------GUGGc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 21944 | 0.66 | 0.457749 |
Target: 5'- gGCGGGggCGGCGGcaGGCGuCUgcggCGCUGu -3' miRNA: 3'- -CGUCCuaGUCGCC--CCGCuGGa---GUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 9233 | 0.69 | 0.304391 |
Target: 5'- gGUGGGggC-GCGGGGUG-UCUCACCa -3' miRNA: 3'- -CGUCCuaGuCGCCCCGCuGGAGUGGc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 34040 | 0.69 | 0.311788 |
Target: 5'- cGCAccuGGUCGGCguguGGGGCGGCCUaagCGCCc -3' miRNA: 3'- -CGUc--CUAGUCG----CCCCGCUGGA---GUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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