miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12780 5' -59.6 NC_003387.1 + 2198 0.69 0.311788
Target:  5'- cGCGGGcUCAG-GGGuGCcucGugCUCGCCGg -3'
miRNA:   3'- -CGUCCuAGUCgCCC-CG---CugGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 3939 0.71 0.243856
Target:  5'- cGCGGcGAUCAGCGGcGaGCuGGCUgCGCCGa -3'
miRNA:   3'- -CGUC-CUAGUCGCC-C-CG-CUGGaGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 5830 0.66 0.467435
Target:  5'- cGCAa----GGCGGcGGCGGCCUCAaguCCGg -3'
miRNA:   3'- -CGUccuagUCGCC-CCGCUGGAGU---GGC- -5'
12780 5' -59.6 NC_003387.1 + 7455 0.69 0.326987
Target:  5'- aCGGGGUCGGCGuGGCGAUCcauuccaGCCGc -3'
miRNA:   3'- cGUCCUAGUCGCcCCGCUGGag-----UGGC- -5'
12780 5' -59.6 NC_003387.1 + 9233 0.69 0.304391
Target:  5'- gGUGGGggC-GCGGGGUG-UCUCACCa -3'
miRNA:   3'- -CGUCCuaGuCGCCCCGCuGGAGUGGc -5'
12780 5' -59.6 NC_003387.1 + 10121 0.67 0.429355
Target:  5'- gGCgAGGGUCaccgGGCGGGGCucGGCCUUcucCCa -3'
miRNA:   3'- -CG-UCCUAG----UCGCCCCG--CUGGAGu--GGc -5'
12780 5' -59.6 NC_003387.1 + 10501 0.74 0.152763
Target:  5'- aGCAaGAUCAGCGGGGCGcucGgCUCGgCGa -3'
miRNA:   3'- -CGUcCUAGUCGCCCCGC---UgGAGUgGC- -5'
12780 5' -59.6 NC_003387.1 + 11263 0.69 0.342729
Target:  5'- gGCGGGggCAGuCaGGGCGGCgUCaggGCCGc -3'
miRNA:   3'- -CGUCCuaGUC-GcCCCGCUGgAG---UGGC- -5'
12780 5' -59.6 NC_003387.1 + 12290 0.69 0.31932
Target:  5'- gGCcGGAUCAGCGGGcCGGg--CACCGg -3'
miRNA:   3'- -CGuCCUAGUCGCCCcGCUggaGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 15104 0.69 0.304391
Target:  5'- cGC-GGAUCGGCgucaacGGGGCG-CCUgACCc -3'
miRNA:   3'- -CGuCCUAGUCG------CCCCGCuGGAgUGGc -5'
12780 5' -59.6 NC_003387.1 + 15914 0.71 0.231841
Target:  5'- cGCAGGAUCGugaagcacgucGCGGuGGCGugCgcgucggccagCGCCGa -3'
miRNA:   3'- -CGUCCUAGU-----------CGCC-CCGCugGa----------GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 16480 0.67 0.448171
Target:  5'- aGCAGGG-CAGCGGGuCGGCgUaCACgGu -3'
miRNA:   3'- -CGUCCUaGUCGCCCcGCUGgA-GUGgC- -5'
12780 5' -59.6 NC_003387.1 + 18901 0.68 0.392283
Target:  5'- uCGGGAUCuugcccAGCGGGaugcccuGCG-CCUCAUCGg -3'
miRNA:   3'- cGUCCUAG------UCGCCC-------CGCuGGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 19456 0.69 0.342729
Target:  5'- uGCGGGcgcguGUCAGUGuGGGCG-CCgaggcCACCGc -3'
miRNA:   3'- -CGUCC-----UAGUCGC-CCCGCuGGa----GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 19741 0.68 0.375824
Target:  5'- uGCcGGGUaCGaaGGucGGCGGCCUCGCCGg -3'
miRNA:   3'- -CGuCCUA-GUcgCC--CCGCUGGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 20063 0.67 0.423801
Target:  5'- gGUAGGGcUCAGUGGcacaaggugaacgacGGCGACCgcucugugaUCGCCa -3'
miRNA:   3'- -CGUCCU-AGUCGCC---------------CCGCUGG---------AGUGGc -5'
12780 5' -59.6 NC_003387.1 + 21633 0.67 0.420122
Target:  5'- gGCAGGcgucgagcGUCAgcucgucgaccGCGGcGGCGGCCgagcacguguUCGCCGa -3'
miRNA:   3'- -CGUCC--------UAGU-----------CGCC-CCGCUGG----------AGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 21944 0.66 0.457749
Target:  5'- gGCGGGggCGGCGGcaGGCGuCUgcggCGCUGu -3'
miRNA:   3'- -CGUCCuaGUCGCC--CCGCuGGa---GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 22030 0.68 0.375824
Target:  5'- cGCGGcGUCgacauuccgugGGCGGuGGCGGCgaUCACCGg -3'
miRNA:   3'- -CGUCcUAG-----------UCGCC-CCGCUGg-AGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 25164 0.69 0.304391
Target:  5'- cGCAGGuucggcUCGGCGcGGUGGCCccggCGCCGc -3'
miRNA:   3'- -CGUCCu-----AGUCGCcCCGCUGGa---GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.