miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12780 5' -59.6 NC_003387.1 + 52590 0.74 0.144804
Target:  5'- gGCGcGGAUC-GCGaGGGCGACCgCAUCGa -3'
miRNA:   3'- -CGU-CCUAGuCGC-CCCGCUGGaGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 51705 0.67 0.438705
Target:  5'- uCAaGAUguGCGGGGCGAUCUUGUCGc -3'
miRNA:   3'- cGUcCUAguCGCCCCGCUGGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 51503 0.74 0.146365
Target:  5'- aGCAGGAUCAGCGGguuaGGCG-CCgcguucgucgcgggCACCa -3'
miRNA:   3'- -CGUCCUAGUCGCC----CCGCuGGa-------------GUGGc -5'
12780 5' -59.6 NC_003387.1 + 51303 0.66 0.457749
Target:  5'- cCAGcucGUCGGCGGcGGCG-CCUCGCa- -3'
miRNA:   3'- cGUCc--UAGUCGCC-CCGCuGGAGUGgc -5'
12780 5' -59.6 NC_003387.1 + 50946 0.67 0.448171
Target:  5'- uGCGGGcuuUCAGCucGGGCG-CCagCGCCGc -3'
miRNA:   3'- -CGUCCu--AGUCGc-CCCGCuGGa-GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 50174 0.66 0.467435
Target:  5'- gGCgAGGAUCuGCcGcGGCGACCgcgugcggaaCACCGg -3'
miRNA:   3'- -CG-UCCUAGuCGcC-CCGCUGGa---------GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 49855 1.11 0.000296
Target:  5'- aGCAGGAUCAGCGGGGCGACCUCACCGa -3'
miRNA:   3'- -CGUCCUAGUCGCCCCGCUGGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 46713 0.71 0.243856
Target:  5'- --uGGAUgAGCGaGGCGACCUCGgCGc -3'
miRNA:   3'- cguCCUAgUCGCcCCGCUGGAGUgGC- -5'
12780 5' -59.6 NC_003387.1 + 45620 0.66 0.491101
Target:  5'- uGCAGGAgUCGGCGuacGGCGaggcgaagaucggccGCCUggCGCCGa -3'
miRNA:   3'- -CGUCCU-AGUCGCc--CCGC---------------UGGA--GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 44284 0.71 0.256384
Target:  5'- cGCAGG-UCAGC-GGGUGugCUCgaguuuuuGCCGg -3'
miRNA:   3'- -CGUCCuAGUCGcCCCGCugGAG--------UGGC- -5'
12780 5' -59.6 NC_003387.1 + 43822 0.67 0.42104
Target:  5'- uGCAcGAUCGGCGaGGGCGagGCCgaggucggggcggugCACCa -3'
miRNA:   3'- -CGUcCUAGUCGC-CCCGC--UGGa--------------GUGGc -5'
12780 5' -59.6 NC_003387.1 + 43212 0.7 0.276158
Target:  5'- cGCGGcGAUCGGCGaGGUGACg-CACCa -3'
miRNA:   3'- -CGUC-CUAGUCGCcCCGCUGgaGUGGc -5'
12780 5' -59.6 NC_003387.1 + 41995 0.68 0.35901
Target:  5'- cGCGGuGcucaagCGGUGGGGCcGCCUgGCCGu -3'
miRNA:   3'- -CGUC-Cua----GUCGCCCCGcUGGAgUGGC- -5'
12780 5' -59.6 NC_003387.1 + 36780 0.79 0.072917
Target:  5'- uGCAGGcgcgaGUCGGCcGGGCGGCCuucUCACCGa -3'
miRNA:   3'- -CGUCC-----UAGUCGcCCCGCUGG---AGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 36576 0.67 0.419206
Target:  5'- uCGGGAUCGaCGGGGCGguGCCcagcagcUUGCCGa -3'
miRNA:   3'- cGUCCUAGUcGCCCCGC--UGG-------AGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 35411 0.72 0.193167
Target:  5'- cGCAGG-UCAGCGGugugauuGGCGGaUUCGCCGg -3'
miRNA:   3'- -CGUCCuAGUCGCC-------CCGCUgGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 35147 0.74 0.161116
Target:  5'- uGCAGGucgacCAGCGGGGCGuUgUCGCCc -3'
miRNA:   3'- -CGUCCua---GUCGCCCCGCuGgAGUGGc -5'
12780 5' -59.6 NC_003387.1 + 34704 0.66 0.487117
Target:  5'- gGCcuGGUaCAuGCGGcGCGACCUgGCCGa -3'
miRNA:   3'- -CGucCUA-GU-CGCCcCGCUGGAgUGGC- -5'
12780 5' -59.6 NC_003387.1 + 34040 0.69 0.311788
Target:  5'- cGCAccuGGUCGGCguguGGGGCGGCCUaagCGCCc -3'
miRNA:   3'- -CGUc--CUAGUCG----CCCCGCUGGA---GUGGc -5'
12780 5' -59.6 NC_003387.1 + 32843 0.68 0.35901
Target:  5'- cGCGGG----GCGGGGCGguuccGCgUCGCCGa -3'
miRNA:   3'- -CGUCCuaguCGCCCCGC-----UGgAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.