miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12780 5' -59.6 NC_003387.1 + 35147 0.74 0.161116
Target:  5'- uGCAGGucgacCAGCGGGGCGuUgUCGCCc -3'
miRNA:   3'- -CGUCCua---GUCGCCCCGCuGgAGUGGc -5'
12780 5' -59.6 NC_003387.1 + 2198 0.69 0.311788
Target:  5'- cGCGGGcUCAG-GGGuGCcucGugCUCGCCGg -3'
miRNA:   3'- -CGUCCuAGUCgCCC-CG---CugGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 29214 0.71 0.256384
Target:  5'- uCGGGGUCGGCGcGGuuGGCCgggCACCa -3'
miRNA:   3'- cGUCCUAGUCGC-CCcgCUGGa--GUGGc -5'
12780 5' -59.6 NC_003387.1 + 44284 0.71 0.256384
Target:  5'- cGCAGG-UCAGC-GGGUGugCUCgaguuuuuGCCGg -3'
miRNA:   3'- -CGUCCuAGUCGcCCCGCugGAG--------UGGC- -5'
12780 5' -59.6 NC_003387.1 + 46713 0.71 0.243856
Target:  5'- --uGGAUgAGCGaGGCGACCUCGgCGc -3'
miRNA:   3'- cguCCUAgUCGCcCCGCUGGAGUgGC- -5'
12780 5' -59.6 NC_003387.1 + 3939 0.71 0.243856
Target:  5'- cGCGGcGAUCAGCGGcGaGCuGGCUgCGCCGa -3'
miRNA:   3'- -CGUC-CUAGUCGCC-C-CG-CUGGaGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 15914 0.71 0.231841
Target:  5'- cGCAGGAUCGugaagcacgucGCGGuGGCGugCgcgucggccagCGCCGa -3'
miRNA:   3'- -CGUCCUAGU-----------CGCC-CCGCugGa----------GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 35411 0.72 0.193167
Target:  5'- cGCAGG-UCAGCGGugugauuGGCGGaUUCGCCGg -3'
miRNA:   3'- -CGUCCuAGUCGCC-------CCGCUgGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 31015 0.73 0.174417
Target:  5'- cCAGG-UCGGCGcGGGCcGCgCUCGCCGa -3'
miRNA:   3'- cGUCCuAGUCGC-CCCGcUG-GAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 7455 0.69 0.326987
Target:  5'- aCGGGGUCGGCGuGGCGAUCcauuccaGCCGc -3'
miRNA:   3'- cGUCCUAGUCGCcCCGCUGGag-----UGGC- -5'
12780 5' -59.6 NC_003387.1 + 28048 0.69 0.33795
Target:  5'- uCGGGAuagcgcgagucacccUCGGCGcuGGCGACCUCGCg- -3'
miRNA:   3'- cGUCCU---------------AGUCGCc-CCGCUGGAGUGgc -5'
12780 5' -59.6 NC_003387.1 + 11263 0.69 0.342729
Target:  5'- gGCGGGggCAGuCaGGGCGGCgUCaggGCCGc -3'
miRNA:   3'- -CGUCCuaGUC-GcCCCGCUGgAG---UGGC- -5'
12780 5' -59.6 NC_003387.1 + 31262 0.66 0.477226
Target:  5'- cGCGGGcugcgcCAGCGGGGCcggguuaguuGACCa-GCCGu -3'
miRNA:   3'- -CGUCCua----GUCGCCCCG----------CUGGagUGGC- -5'
12780 5' -59.6 NC_003387.1 + 50174 0.66 0.467435
Target:  5'- gGCgAGGAUCuGCcGcGGCGACCgcgugcggaaCACCGg -3'
miRNA:   3'- -CG-UCCUAGuCGcC-CCGCUGGa---------GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 50946 0.67 0.448171
Target:  5'- uGCGGGcuuUCAGCucGGGCG-CCagCGCCGc -3'
miRNA:   3'- -CGUCCu--AGUCGc-CCCGCuGGa-GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 51705 0.67 0.438705
Target:  5'- uCAaGAUguGCGGGGCGAUCUUGUCGc -3'
miRNA:   3'- cGUcCUAguCGCCCCGCUGGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 10121 0.67 0.429355
Target:  5'- gGCgAGGGUCaccgGGCGGGGCucGGCCUUcucCCa -3'
miRNA:   3'- -CG-UCCUAG----UCGCCCCG--CUGGAGu--GGc -5'
12780 5' -59.6 NC_003387.1 + 36576 0.67 0.419206
Target:  5'- uCGGGAUCGaCGGGGCGguGCCcagcagcUUGCCGa -3'
miRNA:   3'- cGUCCUAGUcGCCCCGC--UGG-------AGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 25273 0.67 0.408302
Target:  5'- gGCAGGucgcacaucgggcaGUCAGCcaGGGCGACgUCGgCGc -3'
miRNA:   3'- -CGUCC--------------UAGUCGc-CCCGCUGgAGUgGC- -5'
12780 5' -59.6 NC_003387.1 + 18901 0.68 0.392283
Target:  5'- uCGGGAUCuugcccAGCGGGaugcccuGCG-CCUCAUCGg -3'
miRNA:   3'- cGUCCUAG------UCGCCC-------CGCuGGAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.