miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12780 5' -59.6 NC_003387.1 + 25273 0.67 0.408302
Target:  5'- gGCAGGucgcacaucgggcaGUCAGCcaGGGCGACgUCGgCGc -3'
miRNA:   3'- -CGUCC--------------UAGUCGc-CCCGCUGgAGUgGC- -5'
12780 5' -59.6 NC_003387.1 + 26257 0.66 0.467435
Target:  5'- uGCugauGGUCAGCauGGGCGugCUCgACCGc -3'
miRNA:   3'- -CGuc--CUAGUCGc-CCCGCugGAG-UGGC- -5'
12780 5' -59.6 NC_003387.1 + 26489 0.66 0.497104
Target:  5'- aCGGcGAUCGcCGGGGCGACgCUgugaaugaagCGCCGc -3'
miRNA:   3'- cGUC-CUAGUcGCCCCGCUG-GA----------GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 28048 0.69 0.33795
Target:  5'- uCGGGAuagcgcgagucacccUCGGCGcuGGCGACCUCGCg- -3'
miRNA:   3'- cGUCCU---------------AGUCGCc-CCGCUGGAGUGgc -5'
12780 5' -59.6 NC_003387.1 + 29214 0.71 0.256384
Target:  5'- uCGGGGUCGGCGcGGuuGGCCgggCACCa -3'
miRNA:   3'- cGUCCUAGUCGC-CCcgCUGGa--GUGGc -5'
12780 5' -59.6 NC_003387.1 + 31009 0.69 0.340334
Target:  5'- uCAGGAUCGGgccgagcgugcgcCGGGGCGGCggccagcacggCACCGg -3'
miRNA:   3'- cGUCCUAGUC-------------GCCCCGCUGga---------GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 31015 0.73 0.174417
Target:  5'- cCAGG-UCGGCGcGGGCcGCgCUCGCCGa -3'
miRNA:   3'- cGUCCuAGUCGC-CCCGcUG-GAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 31158 0.73 0.174417
Target:  5'- uGCAGGAUCAGCucGGUuGCCUCgguGCCGg -3'
miRNA:   3'- -CGUCCUAGUCGccCCGcUGGAG---UGGC- -5'
12780 5' -59.6 NC_003387.1 + 31262 0.66 0.477226
Target:  5'- cGCGGGcugcgcCAGCGGGGCcggguuaguuGACCa-GCCGu -3'
miRNA:   3'- -CGUCCua----GUCGCCCCG----------CUGGagUGGC- -5'
12780 5' -59.6 NC_003387.1 + 32843 0.68 0.35901
Target:  5'- cGCGGG----GCGGGGCGguuccGCgUCGCCGa -3'
miRNA:   3'- -CGUCCuaguCGCCCCGC-----UGgAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 34040 0.69 0.311788
Target:  5'- cGCAccuGGUCGGCguguGGGGCGGCCUaagCGCCc -3'
miRNA:   3'- -CGUc--CUAGUCG----CCCCGCUGGA---GUGGc -5'
12780 5' -59.6 NC_003387.1 + 34704 0.66 0.487117
Target:  5'- gGCcuGGUaCAuGCGGcGCGACCUgGCCGa -3'
miRNA:   3'- -CGucCUA-GU-CGCCcCGCUGGAgUGGC- -5'
12780 5' -59.6 NC_003387.1 + 35147 0.74 0.161116
Target:  5'- uGCAGGucgacCAGCGGGGCGuUgUCGCCc -3'
miRNA:   3'- -CGUCCua---GUCGCCCCGCuGgAGUGGc -5'
12780 5' -59.6 NC_003387.1 + 35411 0.72 0.193167
Target:  5'- cGCAGG-UCAGCGGugugauuGGCGGaUUCGCCGg -3'
miRNA:   3'- -CGUCCuAGUCGCC-------CCGCUgGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 36576 0.67 0.419206
Target:  5'- uCGGGAUCGaCGGGGCGguGCCcagcagcUUGCCGa -3'
miRNA:   3'- cGUCCUAGUcGCCCCGC--UGG-------AGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 36780 0.79 0.072917
Target:  5'- uGCAGGcgcgaGUCGGCcGGGCGGCCuucUCACCGa -3'
miRNA:   3'- -CGUCC-----UAGUCGcCCCGCUGG---AGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 41995 0.68 0.35901
Target:  5'- cGCGGuGcucaagCGGUGGGGCcGCCUgGCCGu -3'
miRNA:   3'- -CGUC-Cua----GUCGCCCCGcUGGAgUGGC- -5'
12780 5' -59.6 NC_003387.1 + 43212 0.7 0.276158
Target:  5'- cGCGGcGAUCGGCGaGGUGACg-CACCa -3'
miRNA:   3'- -CGUC-CUAGUCGCcCCGCUGgaGUGGc -5'
12780 5' -59.6 NC_003387.1 + 43822 0.67 0.42104
Target:  5'- uGCAcGAUCGGCGaGGGCGagGCCgaggucggggcggugCACCa -3'
miRNA:   3'- -CGUcCUAGUCGC-CCCGC--UGGa--------------GUGGc -5'
12780 5' -59.6 NC_003387.1 + 44284 0.71 0.256384
Target:  5'- cGCAGG-UCAGC-GGGUGugCUCgaguuuuuGCCGg -3'
miRNA:   3'- -CGUCCuAGUCGcCCCGCugGAG--------UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.