Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12780 | 5' | -59.6 | NC_003387.1 | + | 31262 | 0.66 | 0.477226 |
Target: 5'- cGCGGGcugcgcCAGCGGGGCcggguuaguuGACCa-GCCGu -3' miRNA: 3'- -CGUCCua----GUCGCCCCG----------CUGGagUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 31158 | 0.73 | 0.174417 |
Target: 5'- uGCAGGAUCAGCucGGUuGCCUCgguGCCGg -3' miRNA: 3'- -CGUCCUAGUCGccCCGcUGGAG---UGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 31015 | 0.73 | 0.174417 |
Target: 5'- cCAGG-UCGGCGcGGGCcGCgCUCGCCGa -3' miRNA: 3'- cGUCCuAGUCGC-CCCGcUG-GAGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 31009 | 0.69 | 0.340334 |
Target: 5'- uCAGGAUCGGgccgagcgugcgcCGGGGCGGCggccagcacggCACCGg -3' miRNA: 3'- cGUCCUAGUC-------------GCCCCGCUGga---------GUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 29214 | 0.71 | 0.256384 |
Target: 5'- uCGGGGUCGGCGcGGuuGGCCgggCACCa -3' miRNA: 3'- cGUCCUAGUCGC-CCcgCUGGa--GUGGc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 28048 | 0.69 | 0.33795 |
Target: 5'- uCGGGAuagcgcgagucacccUCGGCGcuGGCGACCUCGCg- -3' miRNA: 3'- cGUCCU---------------AGUCGCc-CCGCUGGAGUGgc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 26489 | 0.66 | 0.497104 |
Target: 5'- aCGGcGAUCGcCGGGGCGACgCUgugaaugaagCGCCGc -3' miRNA: 3'- cGUC-CUAGUcGCCCCGCUG-GA----------GUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 26257 | 0.66 | 0.467435 |
Target: 5'- uGCugauGGUCAGCauGGGCGugCUCgACCGc -3' miRNA: 3'- -CGuc--CUAGUCGc-CCCGCugGAG-UGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 25273 | 0.67 | 0.408302 |
Target: 5'- gGCAGGucgcacaucgggcaGUCAGCcaGGGCGACgUCGgCGc -3' miRNA: 3'- -CGUCC--------------UAGUCGc-CCCGCUGgAGUgGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 25164 | 0.69 | 0.304391 |
Target: 5'- cGCAGGuucggcUCGGCGcGGUGGCCccggCGCCGc -3' miRNA: 3'- -CGUCCu-----AGUCGCcCCGCUGGa---GUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 22030 | 0.68 | 0.375824 |
Target: 5'- cGCGGcGUCgacauuccgugGGCGGuGGCGGCgaUCACCGg -3' miRNA: 3'- -CGUCcUAG-----------UCGCC-CCGCUGg-AGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 21944 | 0.66 | 0.457749 |
Target: 5'- gGCGGGggCGGCGGcaGGCGuCUgcggCGCUGu -3' miRNA: 3'- -CGUCCuaGUCGCC--CCGCuGGa---GUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 21633 | 0.67 | 0.420122 |
Target: 5'- gGCAGGcgucgagcGUCAgcucgucgaccGCGGcGGCGGCCgagcacguguUCGCCGa -3' miRNA: 3'- -CGUCC--------UAGU-----------CGCC-CCGCUGG----------AGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 20063 | 0.67 | 0.423801 |
Target: 5'- gGUAGGGcUCAGUGGcacaaggugaacgacGGCGACCgcucugugaUCGCCa -3' miRNA: 3'- -CGUCCU-AGUCGCC---------------CCGCUGG---------AGUGGc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 19741 | 0.68 | 0.375824 |
Target: 5'- uGCcGGGUaCGaaGGucGGCGGCCUCGCCGg -3' miRNA: 3'- -CGuCCUA-GUcgCC--CCGCUGGAGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 19456 | 0.69 | 0.342729 |
Target: 5'- uGCGGGcgcguGUCAGUGuGGGCG-CCgaggcCACCGc -3' miRNA: 3'- -CGUCC-----UAGUCGC-CCCGCuGGa----GUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 18901 | 0.68 | 0.392283 |
Target: 5'- uCGGGAUCuugcccAGCGGGaugcccuGCG-CCUCAUCGg -3' miRNA: 3'- cGUCCUAG------UCGCCC-------CGCuGGAGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 16480 | 0.67 | 0.448171 |
Target: 5'- aGCAGGG-CAGCGGGuCGGCgUaCACgGu -3' miRNA: 3'- -CGUCCUaGUCGCCCcGCUGgA-GUGgC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 15914 | 0.71 | 0.231841 |
Target: 5'- cGCAGGAUCGugaagcacgucGCGGuGGCGugCgcgucggccagCGCCGa -3' miRNA: 3'- -CGUCCUAGU-----------CGCC-CCGCugGa----------GUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 15104 | 0.69 | 0.304391 |
Target: 5'- cGC-GGAUCGGCgucaacGGGGCG-CCUgACCc -3' miRNA: 3'- -CGuCCUAGUCG------CCCCGCuGGAgUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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