miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12781 3' -54.5 NC_003387.1 + 33200 0.66 0.733823
Target:  5'- gGCaGCAGCgAGUUGC-CCCGguUGGCauccaCGCc -3'
miRNA:   3'- -CG-CGUCG-UCAACGaGGGU--ACUGa----GCG- -5'
12781 3' -54.5 NC_003387.1 + 36595 0.66 0.712266
Target:  5'- -gGCGGCAGUaa--CCCGgcguucGACUCGCg -3'
miRNA:   3'- cgCGUCGUCAacgaGGGUa-----CUGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 42914 0.66 0.754961
Target:  5'- aGCGCAGCcugcagcgccGGUcGCUCgacaaCAUGgucgcGCUCGCc -3'
miRNA:   3'- -CGCGUCG----------UCAaCGAGg----GUAC-----UGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 44276 0.69 0.52479
Target:  5'- cGCGCcgcGCGGUgGCUCgCCGUGucuCUCGa -3'
miRNA:   3'- -CGCGu--CGUCAaCGAG-GGUACu--GAGCg -5'
12781 3' -54.5 NC_003387.1 + 45190 0.74 0.297353
Target:  5'- gGCgGCAGCAGUgccGCUCUCGUucacccucggccgcaGACUCGUc -3'
miRNA:   3'- -CG-CGUCGUCAa--CGAGGGUA---------------CUGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 46225 0.67 0.690385
Target:  5'- uGCuGCAGCAGgaggGCUCUCA--GC-CGCu -3'
miRNA:   3'- -CG-CGUCGUCaa--CGAGGGUacUGaGCG- -5'
12781 3' -54.5 NC_003387.1 + 46651 0.67 0.657159
Target:  5'- aCGCAGaCAGgacggUGCUgCCCugcuUGGC-CGCg -3'
miRNA:   3'- cGCGUC-GUCa----ACGA-GGGu---ACUGaGCG- -5'
12781 3' -54.5 NC_003387.1 + 48096 0.7 0.493035
Target:  5'- gGCGCuGCcGcUGCgCCCGcggUGGCUCGCc -3'
miRNA:   3'- -CGCGuCGuCaACGaGGGU---ACUGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 49056 0.73 0.358759
Target:  5'- uGCGCuGCuGgcGCUCaCCGggcaGGCUCGCg -3'
miRNA:   3'- -CGCGuCGuCaaCGAG-GGUa---CUGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 49478 1.13 0.000581
Target:  5'- gGCGCAGCAGUUGCUCCCAUGACUCGCc -3'
miRNA:   3'- -CGCGUCGUCAACGAGGGUACUGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 50286 0.67 0.690385
Target:  5'- cGCGCGuccauGCGGUUGCgcugccacaucUCCCAggcgGGgUCGUu -3'
miRNA:   3'- -CGCGU-----CGUCAACG-----------AGGGUa---CUgAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.