miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12781 3' -54.5 NC_003387.1 + 23969 0.66 0.733823
Target:  5'- uGCGCAGCgccgggcggcuGGUUGUgcaCCGccuGCUCGCu -3'
miRNA:   3'- -CGCGUCG-----------UCAACGag-GGUac-UGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 16833 0.66 0.733823
Target:  5'- cCGCAGCAGgucgacgUGC-CCCuUGACgcUCGa -3'
miRNA:   3'- cGCGUCGUCa------ACGaGGGuACUG--AGCg -5'
12781 3' -54.5 NC_003387.1 + 10460 0.66 0.70136
Target:  5'- -aGCuGCGGcgUGUUCCCAgGugUCGg -3'
miRNA:   3'- cgCGuCGUCa-ACGAGGGUaCugAGCg -5'
12781 3' -54.5 NC_003387.1 + 50286 0.67 0.690385
Target:  5'- cGCGCGuccauGCGGUUGCgcugccacaucUCCCAggcgGGgUCGUu -3'
miRNA:   3'- -CGCGU-----CGUCAACG-----------AGGGUa---CUgAGCG- -5'
12781 3' -54.5 NC_003387.1 + 8782 0.67 0.690385
Target:  5'- cGUGCGGCGGcggGCgaccugauUCCCGcucaGCUCGCg -3'
miRNA:   3'- -CGCGUCGUCaa-CG--------AGGGUac--UGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 15393 0.67 0.679352
Target:  5'- cCGCGGCGGggGCUCguCCAcGGCacgucggCGCg -3'
miRNA:   3'- cGCGUCGUCaaCGAG--GGUaCUGa------GCG- -5'
12781 3' -54.5 NC_003387.1 + 5326 0.67 0.668273
Target:  5'- gGCGgGGcCGGUUGC-CCCGc-GCUUGCg -3'
miRNA:   3'- -CGCgUC-GUCAACGaGGGUacUGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 46651 0.67 0.657159
Target:  5'- aCGCAGaCAGgacggUGCUgCCCugcuUGGC-CGCg -3'
miRNA:   3'- cGCGUC-GUCa----ACGA-GGGu---ACUGaGCG- -5'
12781 3' -54.5 NC_003387.1 + 23815 0.67 0.657159
Target:  5'- cGCGCAGCAGauacgugaggGCgccgCgCCggGACUCGg -3'
miRNA:   3'- -CGCGUCGUCaa--------CGa---G-GGuaCUGAGCg -5'
12781 3' -54.5 NC_003387.1 + 10342 0.67 0.646022
Target:  5'- -gGCAGCcGUUGCgcagCCCGcacaUGAUcCGCa -3'
miRNA:   3'- cgCGUCGuCAACGa---GGGU----ACUGaGCG- -5'
12781 3' -54.5 NC_003387.1 + 5289 0.66 0.744451
Target:  5'- aCGUGGguGUUGUgcaugaggcccUCCUcgGGCUCGg -3'
miRNA:   3'- cGCGUCguCAACG-----------AGGGuaCUGAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.