Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12781 | 5' | -57.5 | NC_003387.1 | + | 6950 | 0.69 | 0.40901 |
Target: 5'- -uGCGCa--GCGGCGGGCagGCGCc- -3' miRNA: 3'- agUGCGaagCGCCGCUCGaaCGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 8319 | 0.67 | 0.497307 |
Target: 5'- gCACaGCgucagcCGCGGCGAGCUU-CGCc- -3' miRNA: 3'- aGUG-CGaa----GCGCCGCUCGAAcGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 20503 | 0.67 | 0.487051 |
Target: 5'- gUCGCGCUcgCGCaGCGcGGCgucGCGCUc -3' miRNA: 3'- -AGUGCGAa-GCGcCGC-UCGaa-CGCGAc -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 43168 | 0.67 | 0.475886 |
Target: 5'- gCugGCgaaUCcaccccgGCGGCG-GCUUGCGCa- -3' miRNA: 3'- aGugCGa--AG-------CGCCGCuCGAACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 19652 | 0.68 | 0.466847 |
Target: 5'- gUUACGC-UCGCGGCGcuuGGC--GCGCa- -3' miRNA: 3'- -AGUGCGaAGCGCCGC---UCGaaCGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 34705 | 0.68 | 0.456909 |
Target: 5'- gCACGCUguacagcCGCGG-GuGCUUGUGCg- -3' miRNA: 3'- aGUGCGAa------GCGCCgCuCGAACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 17761 | 0.68 | 0.447085 |
Target: 5'- cCAgGCc-CGCGuaaaucGCGAGCUUGCGCa- -3' miRNA: 3'- aGUgCGaaGCGC------CGCUCGAACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 1250 | 0.68 | 0.43738 |
Target: 5'- gUCugGCgUUCGCGGUGucgguuGCggUGCgGCUGc -3' miRNA: 3'- -AGugCG-AAGCGCCGCu-----CGa-ACG-CGAC- -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 48705 | 0.68 | 0.418339 |
Target: 5'- cUCGCGCUUgGCGuuguCGAGCaccgUGCGCc- -3' miRNA: 3'- -AGUGCGAAgCGCc---GCUCGa---ACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 5619 | 0.67 | 0.506619 |
Target: 5'- aUCAgGCcgcgUUGCGGCGGGUUuuguugaUGCGgUGa -3' miRNA: 3'- -AGUgCGa---AGCGCCGCUCGA-------ACGCgAC- -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 6364 | 0.67 | 0.507659 |
Target: 5'- gUCGCGCUUggccucggcCGCgGGCGAcGCcUUGCGUg- -3' miRNA: 3'- -AGUGCGAA---------GCG-CCGCU-CG-AACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 20948 | 0.67 | 0.518101 |
Target: 5'- uUCugGUUUCGCGcgguGCGGGCUcgGCGa-- -3' miRNA: 3'- -AGugCGAAGCGC----CGCUCGAa-CGCgac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 39642 | 0.66 | 0.582291 |
Target: 5'- gUCACGCUUCGCcuuGuCGAGC--GCGUa- -3' miRNA: 3'- -AGUGCGAAGCGc--C-GCUCGaaCGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 46921 | 0.66 | 0.571445 |
Target: 5'- gUUGCGCUUCgGUGGUGcgggcGGCUUGUuCUGg -3' miRNA: 3'- -AGUGCGAAG-CGCCGC-----UCGAACGcGAC- -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 15928 | 0.66 | 0.571445 |
Target: 5'- gCACGU--CGCGGUG-GCgUGCGCg- -3' miRNA: 3'- aGUGCGaaGCGCCGCuCGaACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 22090 | 0.66 | 0.560648 |
Target: 5'- -gGCGCUcUCGCGcuUGuGCUUGCGCa- -3' miRNA: 3'- agUGCGA-AGCGCc-GCuCGAACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 12958 | 0.66 | 0.556345 |
Target: 5'- gUUGCGCUUgCGCaccggucGGCGAGCUggucgucgauaaucUcGCGCUGc -3' miRNA: 3'- -AGUGCGAA-GCG-------CCGCUCGA--------------A-CGCGAC- -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 4982 | 0.66 | 0.549908 |
Target: 5'- cUCGCGCagaggucggUCGCGauucuGCGGGCcUGCGCc- -3' miRNA: 3'- -AGUGCGa--------AGCGC-----CGCUCGaACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 19893 | 0.66 | 0.539232 |
Target: 5'- cCcCGCccCGCGGUgcGGGC-UGCGCUGa -3' miRNA: 3'- aGuGCGaaGCGCCG--CUCGaACGCGAC- -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 28015 | 0.67 | 0.518101 |
Target: 5'- aCGCGCU---UGGCGAGCUUGgCGUc- -3' miRNA: 3'- aGUGCGAagcGCCGCUCGAAC-GCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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