miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 3' -60.3 NC_003387.1 + 15753 0.66 0.445786
Target:  5'- aGCaUGAUCGGGGcguacaGCCUGCgGuuGGCg -3'
miRNA:   3'- aCGaGCUAGCCCUa-----CGGGCGgCu-CCG- -5'
12782 3' -60.3 NC_003387.1 + 34516 0.66 0.45531
Target:  5'- cGC-CGGUCGuc--GCgUCGCCGAGGCg -3'
miRNA:   3'- aCGaGCUAGCccuaCG-GGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 49335 1.1 0.000275
Target:  5'- gUGCUCGAUCGGGAUGCCCGCCGAGGCc -3'
miRNA:   3'- -ACGAGCUAGCCCUACGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 27128 0.77 0.076971
Target:  5'- cUGCg-GGUCGaGGccGUGCCCGCCGGGGUc -3'
miRNA:   3'- -ACGagCUAGC-CC--UACGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 9126 0.69 0.288606
Target:  5'- gUGCUCGAaCGGGAUcaGCcggaaCCGCCGAaagaaugaGGUg -3'
miRNA:   3'- -ACGAGCUaGCCCUA--CG-----GGCGGCU--------CCG- -5'
12782 3' -60.3 NC_003387.1 + 18898 0.69 0.287206
Target:  5'- gGCUCGGgaucuugcccagCGGGAUGCCCugcGCCucaucGGGUg -3'
miRNA:   3'- aCGAGCUa-----------GCCCUACGGG---CGGc----UCCG- -5'
12782 3' -60.3 NC_003387.1 + 50987 0.69 0.281661
Target:  5'- aUGCugUCGAUcagcacCGGGAUGCgCCGCCc-GGCc -3'
miRNA:   3'- -ACG--AGCUA------GCCCUACG-GGCGGcuCCG- -5'
12782 3' -60.3 NC_003387.1 + 12561 0.69 0.274849
Target:  5'- gGCUCGAcgacgaUCGGGccGCCgacgguguCGCCGuGGGCc -3'
miRNA:   3'- aCGAGCU------AGCCCuaCGG--------GCGGC-UCCG- -5'
12782 3' -60.3 NC_003387.1 + 14315 0.69 0.274849
Target:  5'- aGC-CGcUCGGGGUGgUUGUCGAGGUc -3'
miRNA:   3'- aCGaGCuAGCCCUACgGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 25152 0.7 0.242757
Target:  5'- aGC-CGAUCGGGGcucgUGUCagcgGCCcGAGGCg -3'
miRNA:   3'- aCGaGCUAGCCCU----ACGGg---CGG-CUCCG- -5'
12782 3' -60.3 NC_003387.1 + 1385 0.68 0.31773
Target:  5'- cGCUCagcgGGUCGGGGUcgcGCUCGaaguugugCGAGGCg -3'
miRNA:   3'- aCGAG----CUAGCCCUA---CGGGCg-------GCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 3067 0.68 0.333101
Target:  5'- cGCUcCGAcgucgacccacUCGGGGccaaGCUCGCCGAccGGCu -3'
miRNA:   3'- aCGA-GCU-----------AGCCCUa---CGGGCGGCU--CCG- -5'
12782 3' -60.3 NC_003387.1 + 11935 0.68 0.333101
Target:  5'- gGCUgCGAgcgCGGGAUcUUgGUCGAGGCg -3'
miRNA:   3'- aCGA-GCUa--GCCCUAcGGgCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 24584 0.68 0.333101
Target:  5'- gGCUCGAUCguGGGgcGCuuGCgGGccucGGCg -3'
miRNA:   3'- aCGAGCUAG--CCCuaCGggCGgCU----CCG- -5'
12782 3' -60.3 NC_003387.1 + 22517 0.68 0.352256
Target:  5'- cGCUCGAcgucggcguaccggcUCGGcGAcUGCUCcuugcCCGAGGCg -3'
miRNA:   3'- aCGAGCU---------------AGCC-CU-ACGGGc----GGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 13919 0.74 0.129616
Target:  5'- cGCcCGAUCGGcaccAUGaCgCCGCCGAGGCu -3'
miRNA:   3'- aCGaGCUAGCCc---UAC-G-GGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 42028 0.74 0.126161
Target:  5'- gGCUUGAUaccGGcgGCcaCCGCCGAGGCg -3'
miRNA:   3'- aCGAGCUAgc-CCuaCG--GGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 31017 0.75 0.113182
Target:  5'- aGgUCGGcgCGGGccgcGCUCGCCGAGGCg -3'
miRNA:   3'- aCgAGCUa-GCCCua--CGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 27946 0.76 0.101459
Target:  5'- gGCUCGGUCGGGgcGCUCGgCGugcucGGCu -3'
miRNA:   3'- aCGAGCUAGCCCuaCGGGCgGCu----CCG- -5'
12782 3' -60.3 NC_003387.1 + 24824 0.76 0.101459
Target:  5'- aGCUCGGcguacUCGGGcgGCUgGCCG-GGCu -3'
miRNA:   3'- aCGAGCU-----AGCCCuaCGGgCGGCuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.