miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 3' -60.3 NC_003387.1 + 47016 0.71 0.219382
Target:  5'- gUGCUCGAcuUCauuGGcgGCCCGgCCG-GGCa -3'
miRNA:   3'- -ACGAGCU--AGc--CCuaCGGGC-GGCuCCG- -5'
12782 3' -60.3 NC_003387.1 + 43924 0.66 0.445786
Target:  5'- gGCgCGAgcugagCGGGAaucaggucGCCCGCCGccGCa -3'
miRNA:   3'- aCGaGCUa-----GCCCUa-------CGGGCGGCucCG- -5'
12782 3' -60.3 NC_003387.1 + 489 0.67 0.382425
Target:  5'- cUGCUCG-UCGcGAUGCgCGCCcgcguGGCg -3'
miRNA:   3'- -ACGAGCuAGCcCUACGgGCGGcu---CCG- -5'
12782 3' -60.3 NC_003387.1 + 9818 0.71 0.216046
Target:  5'- cGCUCGAUUGGGAcgaccuUuacgcuuucauuuucGCCuCGCCGccGGGCa -3'
miRNA:   3'- aCGAGCUAGCCCU------A---------------CGG-GCGGC--UCCG- -5'
12782 3' -60.3 NC_003387.1 + 30414 0.66 0.427079
Target:  5'- cUGCcCGAgcugUCGGG-UGaaaCCgagGCCGAGGCg -3'
miRNA:   3'- -ACGaGCU----AGCCCuACg--GG---CGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 29396 0.66 0.445786
Target:  5'- -cCUCGAUCuc---GCCCGCCGGGcGCa -3'
miRNA:   3'- acGAGCUAGcccuaCGGGCGGCUC-CG- -5'
12782 3' -60.3 NC_003387.1 + 24871 0.66 0.440126
Target:  5'- gGCUCGAccUCGGGcgguggcugcgcccUGUCCaCCGAcGGCa -3'
miRNA:   3'- aCGAGCU--AGCCCu-------------ACGGGcGGCU-CCG- -5'
12782 3' -60.3 NC_003387.1 + 35594 0.76 0.093171
Target:  5'- aGCUggucgacacagCGAUCGccuacggccccgaGGA-GCCCGCCGAGGCg -3'
miRNA:   3'- aCGA-----------GCUAGC-------------CCUaCGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 50869 0.77 0.081367
Target:  5'- cGCUCGAUUGGGucGCCCuugagaacGUCGGGGCg -3'
miRNA:   3'- aCGAGCUAGCCCuaCGGG--------CGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 49225 0.71 0.229073
Target:  5'- cUGC-CGGUCGaGGcgGCCgagcggcugcucgaCGCCGGGGUg -3'
miRNA:   3'- -ACGaGCUAGC-CCuaCGG--------------GCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 10517 0.69 0.310247
Target:  5'- cGCUCGGcUCGGcGAUGCggGCCGGguucGGCc -3'
miRNA:   3'- aCGAGCU-AGCC-CUACGggCGGCU----CCG- -5'
12782 3' -60.3 NC_003387.1 + 5222 0.66 0.440126
Target:  5'- cUGCggggUGAUCGGGugaaccgcgacccGCUgGCCGAcGGCg -3'
miRNA:   3'- -ACGa---GCUAGCCCua-----------CGGgCGGCU-CCG- -5'
12782 3' -60.3 NC_003387.1 + 25152 0.7 0.242757
Target:  5'- aGC-CGAUCGGGGcucgUGUCagcgGCCcGAGGCg -3'
miRNA:   3'- aCGaGCUAGCCCU----ACGGg---CGG-CUCCG- -5'
12782 3' -60.3 NC_003387.1 + 14315 0.69 0.274849
Target:  5'- aGC-CGcUCGGGGUGgUUGUCGAGGUc -3'
miRNA:   3'- aCGaGCuAGCCCUACgGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 12561 0.69 0.274849
Target:  5'- gGCUCGAcgacgaUCGGGccGCCgacgguguCGCCGuGGGCc -3'
miRNA:   3'- aCGAGCU------AGCCCuaCGG--------GCGGC-UCCG- -5'
12782 3' -60.3 NC_003387.1 + 50987 0.69 0.281661
Target:  5'- aUGCugUCGAUcagcacCGGGAUGCgCCGCCc-GGCc -3'
miRNA:   3'- -ACG--AGCUA------GCCCUACG-GGCGGcuCCG- -5'
12782 3' -60.3 NC_003387.1 + 18898 0.69 0.287206
Target:  5'- gGCUCGGgaucuugcccagCGGGAUGCCCugcGCCucaucGGGUg -3'
miRNA:   3'- aCGAGCUa-----------GCCCUACGGG---CGGc----UCCG- -5'
12782 3' -60.3 NC_003387.1 + 2202 0.67 0.407946
Target:  5'- gGCUCa---GGGGUGCCucgugcuCGCCGgucAGGCg -3'
miRNA:   3'- aCGAGcuagCCCUACGG-------GCGGC---UCCG- -5'
12782 3' -60.3 NC_003387.1 + 40423 0.67 0.399912
Target:  5'- cGCUCGugcCGGuGcccgGCCCGCUGAuccGGCc -3'
miRNA:   3'- aCGAGCua-GCC-Cua--CGGGCGGCU---CCG- -5'
12782 3' -60.3 NC_003387.1 + 24921 0.67 0.399912
Target:  5'- -uCUCG-UCGGGca--CCGCCGGGGUg -3'
miRNA:   3'- acGAGCuAGCCCuacgGGCGGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.