miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 3' -60.3 NC_003387.1 + 13919 0.74 0.129616
Target:  5'- cGCcCGAUCGGcaccAUGaCgCCGCCGAGGCu -3'
miRNA:   3'- aCGaGCUAGCCc---UAC-G-GGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 14315 0.69 0.274849
Target:  5'- aGC-CGcUCGGGGUGgUUGUCGAGGUc -3'
miRNA:   3'- aCGaGCuAGCCCUACgGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 14684 0.66 0.436375
Target:  5'- cGCcCGAUCGGGgcGCCguCGCCGcgauccguugcGGuGCa -3'
miRNA:   3'- aCGaGCUAGCCCuaCGG--GCGGC-----------UC-CG- -5'
12782 3' -60.3 NC_003387.1 + 14773 0.66 0.468825
Target:  5'- gUGCUCGAccgcugucucgaacUUGGcGUGCCCGgCGgugccgagccacgcGGGCa -3'
miRNA:   3'- -ACGAGCU--------------AGCCcUACGGGCgGC--------------UCCG- -5'
12782 3' -60.3 NC_003387.1 + 14926 0.69 0.295685
Target:  5'- cUGCUgCGAcCGcGGGUGCUgCGCCcAGGCg -3'
miRNA:   3'- -ACGA-GCUaGC-CCUACGG-GCGGcUCCG- -5'
12782 3' -60.3 NC_003387.1 + 15753 0.66 0.445786
Target:  5'- aGCaUGAUCGGGGcguacaGCCUGCgGuuGGCg -3'
miRNA:   3'- aCGaGCUAGCCCUa-----CGGGCGgCu-CCG- -5'
12782 3' -60.3 NC_003387.1 + 16018 0.67 0.362123
Target:  5'- aGCUCGAcCGGGucgagauucagcuUGCCCGCgGugaacgcGGCc -3'
miRNA:   3'- aCGAGCUaGCCCu------------ACGGGCGgCu------CCG- -5'
12782 3' -60.3 NC_003387.1 + 17068 0.66 0.41699
Target:  5'- cGCccgCGGUCGaGGucggccaGUGCCCGCCc-GGCc -3'
miRNA:   3'- aCGa--GCUAGC-CC-------UACGGGCGGcuCCG- -5'
12782 3' -60.3 NC_003387.1 + 18679 0.69 0.286508
Target:  5'- aGUUCGucgaguacaccggggUGGGgcGCCgUGCCGAGGCa -3'
miRNA:   3'- aCGAGCua-------------GCCCuaCGG-GCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 18898 0.69 0.287206
Target:  5'- gGCUCGGgaucuugcccagCGGGAUGCCCugcGCCucaucGGGUg -3'
miRNA:   3'- aCGAGCUa-----------GCCCUACGGG---CGGc----UCCG- -5'
12782 3' -60.3 NC_003387.1 + 19504 0.67 0.399912
Target:  5'- gGUUCaaGggCGuGGAUGCCaaCCGGGGCa -3'
miRNA:   3'- aCGAG--CuaGC-CCUACGGgcGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 21543 0.67 0.408845
Target:  5'- cGUUCGA-CGuGccGCCCGgcaCCGAGGCa -3'
miRNA:   3'- aCGAGCUaGCcCuaCGGGC---GGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 22517 0.68 0.352256
Target:  5'- cGCUCGAcgucggcguaccggcUCGGcGAcUGCUCcuugcCCGAGGCg -3'
miRNA:   3'- aCGAGCU---------------AGCC-CU-ACGGGc----GGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 23943 0.66 0.436375
Target:  5'- gGCUCGAcCGGGGcacgGCgacaugggCCGCUuguGGGGCg -3'
miRNA:   3'- aCGAGCUaGCCCUa---CG--------GGCGG---CUCCG- -5'
12782 3' -60.3 NC_003387.1 + 24584 0.68 0.333101
Target:  5'- gGCUCGAUCguGGGgcGCuuGCgGGccucGGCg -3'
miRNA:   3'- aCGAGCUAG--CCCuaCGggCGgCU----CCG- -5'
12782 3' -60.3 NC_003387.1 + 24824 0.76 0.101459
Target:  5'- aGCUCGGcguacUCGGGcgGCUgGCCG-GGCu -3'
miRNA:   3'- aCGAGCU-----AGCCCuaCGGgCGGCuCCG- -5'
12782 3' -60.3 NC_003387.1 + 24871 0.66 0.440126
Target:  5'- gGCUCGAccUCGGGcgguggcugcgcccUGUCCaCCGAcGGCa -3'
miRNA:   3'- aCGAGCU--AGCCCu-------------ACGGGcGGCU-CCG- -5'
12782 3' -60.3 NC_003387.1 + 24921 0.67 0.399912
Target:  5'- -uCUCG-UCGGGca--CCGCCGGGGUg -3'
miRNA:   3'- acGAGCuAGCCCuacgGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 25152 0.7 0.242757
Target:  5'- aGC-CGAUCGGGGcucgUGUCagcgGCCcGAGGCg -3'
miRNA:   3'- aCGaGCUAGCCCU----ACGGg---CGG-CUCCG- -5'
12782 3' -60.3 NC_003387.1 + 25799 0.67 0.408845
Target:  5'- cUGCUCGGcggccUCGGuGGcgGCCUGCuCGGcGGCc -3'
miRNA:   3'- -ACGAGCU-----AGCC-CUa-CGGGCG-GCU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.