miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 3' -60.3 NC_003387.1 + 489 0.67 0.382425
Target:  5'- cUGCUCG-UCGcGAUGCgCGCCcgcguGGCg -3'
miRNA:   3'- -ACGAGCuAGCcCUACGgGCGGcu---CCG- -5'
12782 3' -60.3 NC_003387.1 + 962 0.71 0.219382
Target:  5'- --gUCGggCGGGuaguuguguAUGCcgCCGCCGAGGCg -3'
miRNA:   3'- acgAGCuaGCCC---------UACG--GGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 1385 0.68 0.31773
Target:  5'- cGCUCagcgGGUCGGGGUcgcGCUCGaaguugugCGAGGCg -3'
miRNA:   3'- aCGAG----CUAGCCCUA---CGGGCg-------GCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 1632 0.67 0.365454
Target:  5'- aGcCUCGcgCGGGuUGCgCGCUGuuuuGGGCa -3'
miRNA:   3'- aC-GAGCuaGCCCuACGgGCGGC----UCCG- -5'
12782 3' -60.3 NC_003387.1 + 2202 0.67 0.407946
Target:  5'- gGCUCa---GGGGUGCCucgugcuCGCCGgucAGGCg -3'
miRNA:   3'- aCGAGcuagCCCUACGG-------GCGGC---UCCG- -5'
12782 3' -60.3 NC_003387.1 + 2278 0.66 0.472724
Target:  5'- gGCUCGAcgUCGuccucgcugGCguaCGCCGAGGCg -3'
miRNA:   3'- aCGAGCU--AGCccua-----CGg--GCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 3067 0.68 0.333101
Target:  5'- cGCUcCGAcgucgacccacUCGGGGccaaGCUCGCCGAccGGCu -3'
miRNA:   3'- aCGA-GCU-----------AGCCCUa---CGGGCGGCU--CCG- -5'
12782 3' -60.3 NC_003387.1 + 3177 0.67 0.382425
Target:  5'- gGC-CGuaAUCGGGGUgaGCCUGCUcGGGCu -3'
miRNA:   3'- aCGaGC--UAGCCCUA--CGGGCGGcUCCG- -5'
12782 3' -60.3 NC_003387.1 + 3601 0.66 0.436375
Target:  5'- gGCgCGA-CGGGugacagcggGUGCgCGUCGAGGUg -3'
miRNA:   3'- aCGaGCUaGCCC---------UACGgGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 3657 0.68 0.31773
Target:  5'- gGCUCGugcccCGGcuGAgcgGCCUGaCCGAGGCc -3'
miRNA:   3'- aCGAGCua---GCC--CUa--CGGGC-GGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 4835 0.66 0.45531
Target:  5'- cGCUUG-UCGGcGAcgUGCaCGCCGAgauGGCg -3'
miRNA:   3'- aCGAGCuAGCC-CU--ACGgGCGGCU---CCG- -5'
12782 3' -60.3 NC_003387.1 + 5222 0.66 0.440126
Target:  5'- cUGCggggUGAUCGGGugaaccgcgacccGCUgGCCGAcGGCg -3'
miRNA:   3'- -ACGa---GCUAGCCCua-----------CGGgCGGCU-CCG- -5'
12782 3' -60.3 NC_003387.1 + 8533 0.69 0.281661
Target:  5'- gGCUCG--CGGGuaguuaguUGCCCGCgCG-GGCa -3'
miRNA:   3'- aCGAGCuaGCCCu-------ACGGGCG-GCuCCG- -5'
12782 3' -60.3 NC_003387.1 + 9126 0.69 0.288606
Target:  5'- gUGCUCGAaCGGGAUcaGCcggaaCCGCCGAaagaaugaGGUg -3'
miRNA:   3'- -ACGAGCUaGCCCUA--CG-----GGCGGCU--------CCG- -5'
12782 3' -60.3 NC_003387.1 + 9818 0.71 0.216046
Target:  5'- cGCUCGAUUGGGAcgaccuUuacgcuuucauuuucGCCuCGCCGccGGGCa -3'
miRNA:   3'- aCGAGCUAGCCCU------A---------------CGG-GCGGC--UCCG- -5'
12782 3' -60.3 NC_003387.1 + 10220 0.7 0.259682
Target:  5'- aGCUUGAgUCGGGcAUccgcgacgcgaugaGCCgCGCCGAGcGCg -3'
miRNA:   3'- aCGAGCU-AGCCC-UA--------------CGG-GCGGCUC-CG- -5'
12782 3' -60.3 NC_003387.1 + 10517 0.69 0.310247
Target:  5'- cGCUCGGcUCGGcGAUGCggGCCGGguucGGCc -3'
miRNA:   3'- aCGAGCU-AGCC-CUACGggCGGCU----CCG- -5'
12782 3' -60.3 NC_003387.1 + 10674 0.66 0.427079
Target:  5'- gGCUgCGAccacggccgccUCGGcGGUGgCCGCCGguaucaagccGGGCg -3'
miRNA:   3'- aCGA-GCU-----------AGCC-CUACgGGCGGC----------UCCG- -5'
12782 3' -60.3 NC_003387.1 + 11935 0.68 0.333101
Target:  5'- gGCUgCGAgcgCGGGAUcUUgGUCGAGGCg -3'
miRNA:   3'- aCGA-GCUa--GCCCUAcGGgCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 12561 0.69 0.274849
Target:  5'- gGCUCGAcgacgaUCGGGccGCCgacgguguCGCCGuGGGCc -3'
miRNA:   3'- aCGAGCU------AGCCCuaCGG--------GCGGC-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.