miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 3' -60.3 NC_003387.1 + 49335 1.1 0.000275
Target:  5'- gUGCUCGAUCGGGAUGCCCGCCGAGGCc -3'
miRNA:   3'- -ACGAGCUAGCCCUACGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 27128 0.77 0.076971
Target:  5'- cUGCg-GGUCGaGGccGUGCCCGCCGGGGUc -3'
miRNA:   3'- -ACGagCUAGC-CC--UACGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 50869 0.77 0.081367
Target:  5'- cGCUCGAUUGGGucGCCCuugagaacGUCGGGGCg -3'
miRNA:   3'- aCGAGCUAGCCCuaCGGG--------CGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 35594 0.76 0.093171
Target:  5'- aGCUggucgacacagCGAUCGccuacggccccgaGGA-GCCCGCCGAGGCg -3'
miRNA:   3'- aCGA-----------GCUAGC-------------CCUaCGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 24824 0.76 0.101459
Target:  5'- aGCUCGGcguacUCGGGcgGCUgGCCG-GGCu -3'
miRNA:   3'- aCGAGCU-----AGCCCuaCGGgCGGCuCCG- -5'
12782 3' -60.3 NC_003387.1 + 27946 0.76 0.101459
Target:  5'- gGCUCGGUCGGGgcGCUCGgCGugcucGGCu -3'
miRNA:   3'- aCGAGCUAGCCCuaCGGGCgGCu----CCG- -5'
12782 3' -60.3 NC_003387.1 + 31017 0.75 0.113182
Target:  5'- aGgUCGGcgCGGGccgcGCUCGCCGAGGCg -3'
miRNA:   3'- aCgAGCUa-GCCCua--CGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 42028 0.74 0.126161
Target:  5'- gGCUUGAUaccGGcgGCcaCCGCCGAGGCg -3'
miRNA:   3'- aCGAGCUAgc-CCuaCG--GGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 13919 0.74 0.129616
Target:  5'- cGCcCGAUCGGcaccAUGaCgCCGCCGAGGCu -3'
miRNA:   3'- aCGaGCUAGCCc---UAC-G-GGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 33746 0.73 0.156335
Target:  5'- aGCUCG-UC--GAUGCUCGCCGGGGUg -3'
miRNA:   3'- aCGAGCuAGccCUACGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 33431 0.73 0.160537
Target:  5'- aGCUgGAUCGGGcUGCCCGaggCGgucAGGCc -3'
miRNA:   3'- aCGAgCUAGCCCuACGGGCg--GC---UCCG- -5'
12782 3' -60.3 NC_003387.1 + 40470 0.73 0.171039
Target:  5'- cGCggGAuauUCGGGAUcgggugcacgcucucGCCaCGCCGGGGCa -3'
miRNA:   3'- aCGagCU---AGCCCUA---------------CGG-GCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 49055 0.72 0.178377
Target:  5'- gGcCUCGGUCaGGccGCUCaGCCGGGGCa -3'
miRNA:   3'- aC-GAGCUAGcCCuaCGGG-CGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 28721 0.72 0.187942
Target:  5'- cGCUCGA-CGGGGUGUuaucgCUGCCGGugugauGGCa -3'
miRNA:   3'- aCGAGCUaGCCCUACG-----GGCGGCU------CCG- -5'
12782 3' -60.3 NC_003387.1 + 9818 0.71 0.216046
Target:  5'- cGCUCGAUUGGGAcgaccuUuacgcuuucauuuucGCCuCGCCGccGGGCa -3'
miRNA:   3'- aCGAGCUAGCCCU------A---------------CGG-GCGGC--UCCG- -5'
12782 3' -60.3 NC_003387.1 + 962 0.71 0.219382
Target:  5'- --gUCGggCGGGuaguuguguAUGCcgCCGCCGAGGCg -3'
miRNA:   3'- acgAGCuaGCCC---------UACG--GGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 47016 0.71 0.219382
Target:  5'- gUGCUCGAcuUCauuGGcgGCCCGgCCG-GGCa -3'
miRNA:   3'- -ACGAGCU--AGc--CCuaCGGGC-GGCuCCG- -5'
12782 3' -60.3 NC_003387.1 + 49225 0.71 0.229073
Target:  5'- cUGC-CGGUCGaGGcgGCCgagcggcugcucgaCGCCGGGGUg -3'
miRNA:   3'- -ACGaGCUAGC-CCuaCGG--------------GCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 25970 0.7 0.236726
Target:  5'- gGC-CGAUCgcugGGGGUaugccGCUCGCCGGGGUc -3'
miRNA:   3'- aCGaGCUAG----CCCUA-----CGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 25152 0.7 0.242757
Target:  5'- aGC-CGAUCGGGGcucgUGUCagcgGCCcGAGGCg -3'
miRNA:   3'- aCGaGCUAGCCCU----ACGGg---CGG-CUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.