miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 3' -60.3 NC_003387.1 + 50869 0.77 0.081367
Target:  5'- cGCUCGAUUGGGucGCCCuugagaacGUCGGGGCg -3'
miRNA:   3'- aCGAGCUAGCCCuaCGGG--------CGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 489 0.67 0.382425
Target:  5'- cUGCUCG-UCGcGAUGCgCGCCcgcguGGCg -3'
miRNA:   3'- -ACGAGCuAGCcCUACGgGCGGcu---CCG- -5'
12782 3' -60.3 NC_003387.1 + 19504 0.67 0.399912
Target:  5'- gGUUCaaGggCGuGGAUGCCaaCCGGGGCa -3'
miRNA:   3'- aCGAG--CuaGC-CCUACGGgcGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 33591 0.66 0.47468
Target:  5'- gUGCgCGA-CGaaGAU-CCCGCCGAGGUg -3'
miRNA:   3'- -ACGaGCUaGCc-CUAcGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 49225 0.71 0.229073
Target:  5'- cUGC-CGGUCGaGGcgGCCgagcggcugcucgaCGCCGGGGUg -3'
miRNA:   3'- -ACGaGCUAGC-CCuaCGG--------------GCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 10220 0.7 0.259682
Target:  5'- aGCUUGAgUCGGGcAUccgcgacgcgaugaGCCgCGCCGAGcGCg -3'
miRNA:   3'- aCGAGCU-AGCCC-UA--------------CGG-GCGGCUC-CG- -5'
12782 3' -60.3 NC_003387.1 + 18679 0.69 0.286508
Target:  5'- aGUUCGucgaguacaccggggUGGGgcGCCgUGCCGAGGCa -3'
miRNA:   3'- aCGAGCua-------------GCCCuaCGG-GCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 42748 0.69 0.294971
Target:  5'- gUGCUCgGAUCGGcugcgcuGGUGCCCcgaGUCG-GGCa -3'
miRNA:   3'- -ACGAG-CUAGCC-------CUACGGG---CGGCuCCG- -5'
12782 3' -60.3 NC_003387.1 + 3657 0.68 0.31773
Target:  5'- gGCUCGugcccCGGcuGAgcgGCCUGaCCGAGGCc -3'
miRNA:   3'- aCGAGCua---GCC--CUa--CGGGC-GGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 44520 0.67 0.382425
Target:  5'- cUGUUCGugcCGGGccGCCCggcGCCGcaGGGCu -3'
miRNA:   3'- -ACGAGCua-GCCCuaCGGG---CGGC--UCCG- -5'
12782 3' -60.3 NC_003387.1 + 26752 0.68 0.329984
Target:  5'- aGCggcauacccccagCGAUCGGccUGgCCGCCGaAGGCa -3'
miRNA:   3'- aCGa------------GCUAGCCcuACgGGCGGC-UCCG- -5'
12782 3' -60.3 NC_003387.1 + 10517 0.69 0.310247
Target:  5'- cGCUCGGcUCGGcGAUGCggGCCGGguucGGCc -3'
miRNA:   3'- aCGAGCU-AGCC-CUACGggCGGCU----CCG- -5'
12782 3' -60.3 NC_003387.1 + 35594 0.76 0.093171
Target:  5'- aGCUggucgacacagCGAUCGccuacggccccgaGGA-GCCCGCCGAGGCg -3'
miRNA:   3'- aCGA-----------GCUAGC-------------CCUaCGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 44974 0.68 0.333101
Target:  5'- gGCcgCGAUCGccgcUG-CCGCCGAGGCg -3'
miRNA:   3'- aCGa-GCUAGCccu-ACgGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 9818 0.71 0.216046
Target:  5'- cGCUCGAUUGGGAcgaccuUuacgcuuucauuuucGCCuCGCCGccGGGCa -3'
miRNA:   3'- aCGAGCUAGCCCU------A---------------CGG-GCGGC--UCCG- -5'
12782 3' -60.3 NC_003387.1 + 43720 0.69 0.295685
Target:  5'- gUGCUCGAcggcggcaugCGGGA-GCCCGCgagCGuguuGGCg -3'
miRNA:   3'- -ACGAGCUa---------GCCCUaCGGGCG---GCu---CCG- -5'
12782 3' -60.3 NC_003387.1 + 31006 0.67 0.373874
Target:  5'- aGgUCagGAUCGGGccgagcGUgCGCCGGGGCg -3'
miRNA:   3'- aCgAG--CUAGCCCua----CGgGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 43818 0.67 0.391104
Target:  5'- gUGCUgcaCGAUCGGcGAgggcgagGCCgagGUCGGGGCg -3'
miRNA:   3'- -ACGA---GCUAGCC-CUa------CGGg--CGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 47016 0.71 0.219382
Target:  5'- gUGCUCGAcuUCauuGGcgGCCCGgCCG-GGCa -3'
miRNA:   3'- -ACGAGCU--AGc--CCuaCGGGC-GGCuCCG- -5'
12782 3' -60.3 NC_003387.1 + 8533 0.69 0.281661
Target:  5'- gGCUCG--CGGGuaguuaguUGCCCGCgCG-GGCa -3'
miRNA:   3'- aCGAGCuaGCCCu-------ACGGGCG-GCuCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.