miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 3' -60.3 NC_003387.1 + 11935 0.68 0.333101
Target:  5'- gGCUgCGAgcgCGGGAUcUUgGUCGAGGCg -3'
miRNA:   3'- aCGA-GCUa--GCCCUAcGGgCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 2202 0.67 0.407946
Target:  5'- gGCUCa---GGGGUGCCucgugcuCGCCGgucAGGCg -3'
miRNA:   3'- aCGAGcuagCCCUACGG-------GCGGC---UCCG- -5'
12782 3' -60.3 NC_003387.1 + 40423 0.67 0.399912
Target:  5'- cGCUCGugcCGGuGcccgGCCCGCUGAuccGGCc -3'
miRNA:   3'- aCGAGCua-GCC-Cua--CGGGCGGCU---CCG- -5'
12782 3' -60.3 NC_003387.1 + 24921 0.67 0.399912
Target:  5'- -uCUCG-UCGGGca--CCGCCGGGGUg -3'
miRNA:   3'- acGAGCuAGCCCuacgGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 3177 0.67 0.382425
Target:  5'- gGC-CGuaAUCGGGGUgaGCCUGCUcGGGCu -3'
miRNA:   3'- aCGaGC--UAGCCCUA--CGGGCGGcUCCG- -5'
12782 3' -60.3 NC_003387.1 + 1632 0.67 0.365454
Target:  5'- aGcCUCGcgCGGGuUGCgCGCUGuuuuGGGCa -3'
miRNA:   3'- aC-GAGCuaGCCCuACGgGCGGC----UCCG- -5'
12782 3' -60.3 NC_003387.1 + 16018 0.67 0.362123
Target:  5'- aGCUCGAcCGGGucgagauucagcuUGCCCGCgGugaacgcGGCc -3'
miRNA:   3'- aCGAGCUaGCCCu------------ACGGGCGgCu------CCG- -5'
12782 3' -60.3 NC_003387.1 + 22517 0.68 0.352256
Target:  5'- cGCUCGAcgucggcguaccggcUCGGcGAcUGCUCcuugcCCGAGGCg -3'
miRNA:   3'- aCGAGCU---------------AGCC-CU-ACGGGc----GGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 24584 0.68 0.333101
Target:  5'- gGCUCGAUCguGGGgcGCuuGCgGGccucGGCg -3'
miRNA:   3'- aCGAGCUAG--CCCuaCGggCGgCU----CCG- -5'
12782 3' -60.3 NC_003387.1 + 21543 0.67 0.408845
Target:  5'- cGUUCGA-CGuGccGCCCGgcaCCGAGGCa -3'
miRNA:   3'- aCGAGCUaGCcCuaCGGGC---GGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 17068 0.66 0.41699
Target:  5'- cGCccgCGGUCGaGGucggccaGUGCCCGCCc-GGCc -3'
miRNA:   3'- aCGa--GCUAGC-CC-------UACGGGCGGcuCCG- -5'
12782 3' -60.3 NC_003387.1 + 35075 0.66 0.427079
Target:  5'- uUGCccuugUCGGUCGGGccgagGCUCGCCuucaacgguucGAGGUc -3'
miRNA:   3'- -ACG-----AGCUAGCCCua---CGGGCGG-----------CUCCG- -5'
12782 3' -60.3 NC_003387.1 + 14773 0.66 0.468825
Target:  5'- gUGCUCGAccgcugucucgaacUUGGcGUGCCCGgCGgugccgagccacgcGGGCa -3'
miRNA:   3'- -ACGAGCU--------------AGCCcUACGGGCgGC--------------UCCG- -5'
12782 3' -60.3 NC_003387.1 + 34516 0.66 0.45531
Target:  5'- cGC-CGGUCGuc--GCgUCGCCGAGGCg -3'
miRNA:   3'- aCGaGCUAGCccuaCG-GGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 34757 0.66 0.451487
Target:  5'- uUGCUUGAccgacgaccacacCGGGGucUGCCCGUCcucGGGCg -3'
miRNA:   3'- -ACGAGCUa------------GCCCU--ACGGGCGGc--UCCG- -5'
12782 3' -60.3 NC_003387.1 + 15753 0.66 0.445786
Target:  5'- aGCaUGAUCGGGGcguacaGCCUGCgGuuGGCg -3'
miRNA:   3'- aCGaGCUAGCCCUa-----CGGGCGgCu-CCG- -5'
12782 3' -60.3 NC_003387.1 + 32079 0.66 0.445786
Target:  5'- gUGUUCGc-CGGGAgcggcacauUGCCCGCCGGu-- -3'
miRNA:   3'- -ACGAGCuaGCCCU---------ACGGGCGGCUccg -5'
12782 3' -60.3 NC_003387.1 + 5222 0.66 0.440126
Target:  5'- cUGCggggUGAUCGGGugaaccgcgacccGCUgGCCGAcGGCg -3'
miRNA:   3'- -ACGa---GCUAGCCCua-----------CGGgCGGCU-CCG- -5'
12782 3' -60.3 NC_003387.1 + 14684 0.66 0.436375
Target:  5'- cGCcCGAUCGGGgcGCCguCGCCGcgauccguugcGGuGCa -3'
miRNA:   3'- aCGaGCUAGCCCuaCGG--GCGGC-----------UC-CG- -5'
12782 3' -60.3 NC_003387.1 + 3601 0.66 0.436375
Target:  5'- gGCgCGA-CGGGugacagcggGUGCgCGUCGAGGUg -3'
miRNA:   3'- aCGaGCUaGCCC---------UACGgGCGGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.