miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 3' -60.3 NC_003387.1 + 1385 0.68 0.31773
Target:  5'- cGCUCagcgGGUCGGGGUcgcGCUCGaaguugugCGAGGCg -3'
miRNA:   3'- aCGAG----CUAGCCCUA---CGGGCg-------GCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 34520 0.68 0.31773
Target:  5'- cGCcgCGAuccUCGGGcUGCCCGUCGAcccGCu -3'
miRNA:   3'- aCGa-GCU---AGCCCuACGGGCGGCUc--CG- -5'
12782 3' -60.3 NC_003387.1 + 3657 0.68 0.31773
Target:  5'- gGCUCGugcccCGGcuGAgcgGCCUGaCCGAGGCc -3'
miRNA:   3'- aCGAGCua---GCC--CUa--CGGGC-GGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 10517 0.69 0.310247
Target:  5'- cGCUCGGcUCGGcGAUGCggGCCGGguucGGCc -3'
miRNA:   3'- aCGAGCU-AGCC-CUACGggCGGCU----CCG- -5'
12782 3' -60.3 NC_003387.1 + 43720 0.69 0.295685
Target:  5'- gUGCUCGAcggcggcaugCGGGA-GCCCGCgagCGuguuGGCg -3'
miRNA:   3'- -ACGAGCUa---------GCCCUaCGGGCG---GCu---CCG- -5'
12782 3' -60.3 NC_003387.1 + 14926 0.69 0.295685
Target:  5'- cUGCUgCGAcCGcGGGUGCUgCGCCcAGGCg -3'
miRNA:   3'- -ACGA-GCUaGC-CCUACGG-GCGGcUCCG- -5'
12782 3' -60.3 NC_003387.1 + 42748 0.69 0.294971
Target:  5'- gUGCUCgGAUCGGcugcgcuGGUGCCCcgaGUCG-GGCa -3'
miRNA:   3'- -ACGAG-CUAGCC-------CUACGGG---CGGCuCCG- -5'
12782 3' -60.3 NC_003387.1 + 9126 0.69 0.288606
Target:  5'- gUGCUCGAaCGGGAUcaGCcggaaCCGCCGAaagaaugaGGUg -3'
miRNA:   3'- -ACGAGCUaGCCCUA--CG-----GGCGGCU--------CCG- -5'
12782 3' -60.3 NC_003387.1 + 18898 0.69 0.287206
Target:  5'- gGCUCGGgaucuugcccagCGGGAUGCCCugcGCCucaucGGGUg -3'
miRNA:   3'- aCGAGCUa-----------GCCCUACGGG---CGGc----UCCG- -5'
12782 3' -60.3 NC_003387.1 + 18679 0.69 0.286508
Target:  5'- aGUUCGucgaguacaccggggUGGGgcGCCgUGCCGAGGCa -3'
miRNA:   3'- aCGAGCua-------------GCCCuaCGG-GCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 8533 0.69 0.281661
Target:  5'- gGCUCG--CGGGuaguuaguUGCCCGCgCG-GGCa -3'
miRNA:   3'- aCGAGCuaGCCCu-------ACGGGCG-GCuCCG- -5'
12782 3' -60.3 NC_003387.1 + 50987 0.69 0.281661
Target:  5'- aUGCugUCGAUcagcacCGGGAUGCgCCGCCc-GGCc -3'
miRNA:   3'- -ACG--AGCUA------GCCCUACG-GGCGGcuCCG- -5'
12782 3' -60.3 NC_003387.1 + 12561 0.69 0.274849
Target:  5'- gGCUCGAcgacgaUCGGGccGCCgacgguguCGCCGuGGGCc -3'
miRNA:   3'- aCGAGCU------AGCCCuaCGG--------GCGGC-UCCG- -5'
12782 3' -60.3 NC_003387.1 + 14315 0.69 0.274849
Target:  5'- aGC-CGcUCGGGGUGgUUGUCGAGGUc -3'
miRNA:   3'- aCGaGCuAGCCCUACgGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 10220 0.7 0.259682
Target:  5'- aGCUUGAgUCGGGcAUccgcgacgcgaugaGCCgCGCCGAGcGCg -3'
miRNA:   3'- aCGAGCU-AGCCC-UA--------------CGG-GCGGCUC-CG- -5'
12782 3' -60.3 NC_003387.1 + 25152 0.7 0.242757
Target:  5'- aGC-CGAUCGGGGcucgUGUCagcgGCCcGAGGCg -3'
miRNA:   3'- aCGaGCUAGCCCU----ACGGg---CGG-CUCCG- -5'
12782 3' -60.3 NC_003387.1 + 25970 0.7 0.236726
Target:  5'- gGC-CGAUCgcugGGGGUaugccGCUCGCCGGGGUc -3'
miRNA:   3'- aCGaGCUAG----CCCUA-----CGGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 49225 0.71 0.229073
Target:  5'- cUGC-CGGUCGaGGcgGCCgagcggcugcucgaCGCCGGGGUg -3'
miRNA:   3'- -ACGaGCUAGC-CCuaCGG--------------GCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 47016 0.71 0.219382
Target:  5'- gUGCUCGAcuUCauuGGcgGCCCGgCCG-GGCa -3'
miRNA:   3'- -ACGAGCU--AGc--CCuaCGGGC-GGCuCCG- -5'
12782 3' -60.3 NC_003387.1 + 962 0.71 0.219382
Target:  5'- --gUCGggCGGGuaguuguguAUGCcgCCGCCGAGGCg -3'
miRNA:   3'- acgAGCuaGCCC---------UACG--GGCGGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.