miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 3' -60.3 NC_003387.1 + 17068 0.66 0.41699
Target:  5'- cGCccgCGGUCGaGGucggccaGUGCCCGCCc-GGCc -3'
miRNA:   3'- aCGa--GCUAGC-CC-------UACGGGCGGcuCCG- -5'
12782 3' -60.3 NC_003387.1 + 25799 0.67 0.408845
Target:  5'- cUGCUCGGcggccUCGGuGGcgGCCUGCuCGGcGGCc -3'
miRNA:   3'- -ACGAGCU-----AGCC-CUa-CGGGCG-GCU-CCG- -5'
12782 3' -60.3 NC_003387.1 + 21543 0.67 0.408845
Target:  5'- cGUUCGA-CGuGccGCCCGgcaCCGAGGCa -3'
miRNA:   3'- aCGAGCUaGCcCuaCGGGC---GGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 2202 0.67 0.407946
Target:  5'- gGCUCa---GGGGUGCCucgugcuCGCCGgucAGGCg -3'
miRNA:   3'- aCGAGcuagCCCUACGG-------GCGGC---UCCG- -5'
12782 3' -60.3 NC_003387.1 + 19504 0.67 0.399912
Target:  5'- gGUUCaaGggCGuGGAUGCCaaCCGGGGCa -3'
miRNA:   3'- aCGAG--CuaGC-CCUACGGgcGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 24921 0.67 0.399912
Target:  5'- -uCUCG-UCGGGca--CCGCCGGGGUg -3'
miRNA:   3'- acGAGCuAGCCCuacgGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 40423 0.67 0.399912
Target:  5'- cGCUCGugcCGGuGcccgGCCCGCUGAuccGGCc -3'
miRNA:   3'- aCGAGCua-GCC-Cua--CGGGCGGCU---CCG- -5'
12782 3' -60.3 NC_003387.1 + 43818 0.67 0.391104
Target:  5'- gUGCUgcaCGAUCGGcGAgggcgagGCCgagGUCGGGGCg -3'
miRNA:   3'- -ACGA---GCUAGCC-CUa------CGGg--CGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 3177 0.67 0.382425
Target:  5'- gGC-CGuaAUCGGGGUgaGCCUGCUcGGGCu -3'
miRNA:   3'- aCGaGC--UAGCCCUA--CGGGCGGcUCCG- -5'
12782 3' -60.3 NC_003387.1 + 489 0.67 0.382425
Target:  5'- cUGCUCG-UCGcGAUGCgCGCCcgcguGGCg -3'
miRNA:   3'- -ACGAGCuAGCcCUACGgGCGGcu---CCG- -5'
12782 3' -60.3 NC_003387.1 + 44520 0.67 0.382425
Target:  5'- cUGUUCGugcCGGGccGCCCggcGCCGcaGGGCu -3'
miRNA:   3'- -ACGAGCua-GCCCuaCGGG---CGGC--UCCG- -5'
12782 3' -60.3 NC_003387.1 + 31006 0.67 0.373874
Target:  5'- aGgUCagGAUCGGGccgagcGUgCGCCGGGGCg -3'
miRNA:   3'- aCgAG--CUAGCCCua----CGgGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 1632 0.67 0.365454
Target:  5'- aGcCUCGcgCGGGuUGCgCGCUGuuuuGGGCa -3'
miRNA:   3'- aC-GAGCuaGCCCuACGgGCGGC----UCCG- -5'
12782 3' -60.3 NC_003387.1 + 16018 0.67 0.362123
Target:  5'- aGCUCGAcCGGGucgagauucagcuUGCCCGCgGugaacgcGGCc -3'
miRNA:   3'- aCGAGCUaGCCCu------------ACGGGCGgCu------CCG- -5'
12782 3' -60.3 NC_003387.1 + 22517 0.68 0.352256
Target:  5'- cGCUCGAcgucggcguaccggcUCGGcGAcUGCUCcuugcCCGAGGCg -3'
miRNA:   3'- aCGAGCU---------------AGCC-CU-ACGGGc----GGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 3067 0.68 0.333101
Target:  5'- cGCUcCGAcgucgacccacUCGGGGccaaGCUCGCCGAccGGCu -3'
miRNA:   3'- aCGA-GCU-----------AGCCCUa---CGGGCGGCU--CCG- -5'
12782 3' -60.3 NC_003387.1 + 11935 0.68 0.333101
Target:  5'- gGCUgCGAgcgCGGGAUcUUgGUCGAGGCg -3'
miRNA:   3'- aCGA-GCUa--GCCCUAcGGgCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 24584 0.68 0.333101
Target:  5'- gGCUCGAUCguGGGgcGCuuGCgGGccucGGCg -3'
miRNA:   3'- aCGAGCUAG--CCCuaCGggCGgCU----CCG- -5'
12782 3' -60.3 NC_003387.1 + 44974 0.68 0.333101
Target:  5'- gGCcgCGAUCGccgcUG-CCGCCGAGGCg -3'
miRNA:   3'- aCGa-GCUAGCccu-ACgGGCGGCUCCG- -5'
12782 3' -60.3 NC_003387.1 + 26752 0.68 0.329984
Target:  5'- aGCggcauacccccagCGAUCGGccUGgCCGCCGaAGGCa -3'
miRNA:   3'- aCGa------------GCUAGCCcuACgGGCGGC-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.