miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 5' -56.9 NC_003387.1 + 16094 0.66 0.584954
Target:  5'- -cGCCGUCGggcaucgcgGCGGCCaGCaGCC--GCGAg -3'
miRNA:   3'- uaCGGCAGC---------UGCUGG-CG-CGGuuUGCU- -5'
12782 5' -56.9 NC_003387.1 + 30215 0.66 0.584954
Target:  5'- -cGCCGaCGuCGAgCGCGCCGc-CGAg -3'
miRNA:   3'- uaCGGCaGCuGCUgGCGCGGUuuGCU- -5'
12782 5' -56.9 NC_003387.1 + 4483 0.66 0.584954
Target:  5'- -gGCCG-CGGcCGACCGgGCgCGAcACGAu -3'
miRNA:   3'- uaCGGCaGCU-GCUGGCgCG-GUU-UGCU- -5'
12782 5' -56.9 NC_003387.1 + 8738 0.66 0.583872
Target:  5'- -aGCCgGUCGACGugaACCGUcagcuucGCCAuGCGGg -3'
miRNA:   3'- uaCGG-CAGCUGC---UGGCG-------CGGUuUGCU- -5'
12782 5' -56.9 NC_003387.1 + 1700 0.66 0.583872
Target:  5'- -gGCgGUCGACugGAUCGCugagcggGCCGGGCGGc -3'
miRNA:   3'- uaCGgCAGCUG--CUGGCG-------CGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 45944 0.67 0.574151
Target:  5'- cGUGuUCGcCGACGGcCCGCGCaagGGCGAg -3'
miRNA:   3'- -UAC-GGCaGCUGCU-GGCGCGgu-UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 17478 0.67 0.574151
Target:  5'- uUGUCGUCGGCGuACUugcggGCGCC--GCGGc -3'
miRNA:   3'- uACGGCAGCUGC-UGG-----CGCGGuuUGCU- -5'
12782 5' -56.9 NC_003387.1 + 45847 0.67 0.574151
Target:  5'- gGUGCCacgaCGGCGACCggcgucuuguugGCGCCcuGAGCGGu -3'
miRNA:   3'- -UACGGca--GCUGCUGG------------CGCGG--UUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 36339 0.67 0.574151
Target:  5'- -gGUCGUCGuCGACUGCG--AAACGAc -3'
miRNA:   3'- uaCGGCAGCuGCUGGCGCggUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 7316 0.67 0.574151
Target:  5'- -gGCCGUaccUGuCGGCUGCGCuCAAGCa- -3'
miRNA:   3'- uaCGGCA---GCuGCUGGCGCG-GUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 46046 0.67 0.574151
Target:  5'- -cGUCGUCGaggaucugcaGCGcACCGCGCUuGAGCGGg -3'
miRNA:   3'- uaCGGCAGC----------UGC-UGGCGCGG-UUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 14635 0.67 0.574151
Target:  5'- gGUGcCCGUCaGGCcGCCGCGCaCAGugacGCGGc -3'
miRNA:   3'- -UAC-GGCAG-CUGcUGGCGCG-GUU----UGCU- -5'
12782 5' -56.9 NC_003387.1 + 44395 0.67 0.574151
Target:  5'- -gGUCGUCGAgguCGGCCGgGCCGuagUGAu -3'
miRNA:   3'- uaCGGCAGCU---GCUGGCgCGGUuu-GCU- -5'
12782 5' -56.9 NC_003387.1 + 11076 0.67 0.563393
Target:  5'- -aGUCGUCGACGuACCgcaGCGCCuuAGCu- -3'
miRNA:   3'- uaCGGCAGCUGC-UGG---CGCGGu-UUGcu -5'
12782 5' -56.9 NC_003387.1 + 8087 0.67 0.563393
Target:  5'- cUGCCgGUCGGCGccaACC-CGCCcgaGGGCGAg -3'
miRNA:   3'- uACGG-CAGCUGC---UGGcGCGG---UUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 43374 0.67 0.563393
Target:  5'- -gGCuCGUCGACGuCCugGUGCUcGACGAc -3'
miRNA:   3'- uaCG-GCAGCUGCuGG--CGCGGuUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 22226 0.67 0.563393
Target:  5'- uUGCCGaCGGuccacuCGACCgGCGCC-GACGGg -3'
miRNA:   3'- uACGGCaGCU------GCUGG-CGCGGuUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 47801 0.67 0.563393
Target:  5'- -cGCg--CGACG-CCGCGCCGGGCa- -3'
miRNA:   3'- uaCGgcaGCUGCuGGCGCGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 39254 0.67 0.563393
Target:  5'- -gGCCGUCGAguuCGACCuCGgCGAGCu- -3'
miRNA:   3'- uaCGGCAGCU---GCUGGcGCgGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 46514 0.67 0.563393
Target:  5'- -aGCuCGcUCGGCGACUGCaCCAAcgGCGGc -3'
miRNA:   3'- uaCG-GC-AGCUGCUGGCGcGGUU--UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.