miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 5' -56.9 NC_003387.1 + 26589 0.66 0.617564
Target:  5'- -gGCCGcgcgagCGGCGACggaCGCGCCGAccugGCGc -3'
miRNA:   3'- uaCGGCa-----GCUGCUG---GCGCGGUU----UGCu -5'
12782 5' -56.9 NC_003387.1 + 19994 0.66 0.60667
Target:  5'- -cGCCGa-GGCcACCGCGCCGuGCGc -3'
miRNA:   3'- uaCGGCagCUGcUGGCGCGGUuUGCu -5'
12782 5' -56.9 NC_003387.1 + 36396 0.66 0.60667
Target:  5'- -cGCCGcggucaacaUCGAC-ACCgGCGCCGAGCu- -3'
miRNA:   3'- uaCGGC---------AGCUGcUGG-CGCGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 7054 0.66 0.60667
Target:  5'- -gGCCGcUCGcccUGACCggacaccuucgGCGCCAGGCGGc -3'
miRNA:   3'- uaCGGC-AGCu--GCUGG-----------CGCGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 45569 0.66 0.60667
Target:  5'- -aGCuCGUCGgcACGGCCGaggaGCCGGGCc- -3'
miRNA:   3'- uaCG-GCAGC--UGCUGGCg---CGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 21559 0.66 0.60667
Target:  5'- -cGUCGUCGugcaGACCGUGgcCCAGGCGc -3'
miRNA:   3'- uaCGGCAGCug--CUGGCGC--GGUUUGCu -5'
12782 5' -56.9 NC_003387.1 + 11101 0.66 0.60667
Target:  5'- -aGCCGcUCG-CGACCGgGCUuAugGGc -3'
miRNA:   3'- uaCGGC-AGCuGCUGGCgCGGuUugCU- -5'
12782 5' -56.9 NC_003387.1 + 24159 0.66 0.60667
Target:  5'- -cGUCGUCGACGGCgauCGCcGCCu--CGGu -3'
miRNA:   3'- uaCGGCAGCUGCUG---GCG-CGGuuuGCU- -5'
12782 5' -56.9 NC_003387.1 + 20039 0.66 0.60667
Target:  5'- gGUGUCGaCGACGugCGCGgCGAGg-- -3'
miRNA:   3'- -UACGGCaGCUGCugGCGCgGUUUgcu -5'
12782 5' -56.9 NC_003387.1 + 23228 0.66 0.60667
Target:  5'- -aGCCgGUCGACGcccaucucgcggGCCGUGCCcuGCu- -3'
miRNA:   3'- uaCGG-CAGCUGC------------UGGCGCGGuuUGcu -5'
12782 5' -56.9 NC_003387.1 + 11725 0.66 0.60667
Target:  5'- -gGCCGUCGACG-CCGa-UCAGGCa- -3'
miRNA:   3'- uaCGGCAGCUGCuGGCgcGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 42174 0.66 0.595797
Target:  5'- -cGCCGagUCGAU--CUGCGUCAGACGGc -3'
miRNA:   3'- uaCGGC--AGCUGcuGGCGCGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 45697 0.66 0.595797
Target:  5'- cUGCCGUUGaacGCGAaaGCGgCCGAGCu- -3'
miRNA:   3'- uACGGCAGC---UGCUggCGC-GGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 10795 0.66 0.595797
Target:  5'- -gGUCGUCGGCGuCgGCGgCAcACGGc -3'
miRNA:   3'- uaCGGCAGCUGCuGgCGCgGUuUGCU- -5'
12782 5' -56.9 NC_003387.1 + 42057 0.66 0.595797
Target:  5'- -gGCCGUgGuCGcaGCCGCGUCGAGgcCGAa -3'
miRNA:   3'- uaCGGCAgCuGC--UGGCGCGGUUU--GCU- -5'
12782 5' -56.9 NC_003387.1 + 45375 0.66 0.595797
Target:  5'- cAUGCCGgugCGguACGGCCGCaGCCGuugcuUGAg -3'
miRNA:   3'- -UACGGCa--GC--UGCUGGCG-CGGUuu---GCU- -5'
12782 5' -56.9 NC_003387.1 + 35702 0.66 0.592541
Target:  5'- -gGCCGUacggCGACGACgGCcugccgcugaccgaGCUGGACGAa -3'
miRNA:   3'- uaCGGCA----GCUGCUGgCG--------------CGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 14203 0.66 0.588203
Target:  5'- -cGCCGUCGGCGcucacuuGCCGCccucgcacgcccacgGCCGcuCGGg -3'
miRNA:   3'- uaCGGCAGCUGC-------UGGCG---------------CGGUuuGCU- -5'
12782 5' -56.9 NC_003387.1 + 16094 0.66 0.584954
Target:  5'- -cGCCGUCGggcaucgcgGCGGCCaGCaGCC--GCGAg -3'
miRNA:   3'- uaCGGCAGC---------UGCUGG-CG-CGGuuUGCU- -5'
12782 5' -56.9 NC_003387.1 + 4483 0.66 0.584954
Target:  5'- -gGCCG-CGGcCGACCGgGCgCGAcACGAu -3'
miRNA:   3'- uaCGGCaGCU-GCUGGCgCG-GUU-UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.