miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 5' -56.9 NC_003387.1 + 10015 0.7 0.388423
Target:  5'- -gGCCGggCGACGACgacgacgagccgaagCGCGCCGAgggcGCGGu -3'
miRNA:   3'- uaCGGCa-GCUGCUG---------------GCGCGGUU----UGCU- -5'
12782 5' -56.9 NC_003387.1 + 18734 0.7 0.37607
Target:  5'- -aGCuCGUCGuCGACCGCGaCCcgcuGCGGc -3'
miRNA:   3'- uaCG-GCAGCuGCUGGCGC-GGuu--UGCU- -5'
12782 5' -56.9 NC_003387.1 + 41008 0.72 0.281405
Target:  5'- -cGgCGUCGACGGCCGgGUCGAcuGCGu -3'
miRNA:   3'- uaCgGCAGCUGCUGGCgCGGUU--UGCu -5'
12782 5' -56.9 NC_003387.1 + 17439 0.74 0.205029
Target:  5'- cUGCUGUCGGCGACCugguacggaaucguGCGCagcaaGGACGAu -3'
miRNA:   3'- uACGGCAGCUGCUGG--------------CGCGg----UUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 19739 0.69 0.440413
Target:  5'- gGUGCCGgguacgaaggUCGGCGGCCuCGCCGGAa-- -3'
miRNA:   3'- -UACGGC----------AGCUGCUGGcGCGGUUUgcu -5'
12782 5' -56.9 NC_003387.1 + 50151 0.7 0.402865
Target:  5'- cUGCCGUgugacCGGCGACaaCGCCAccGGCGAg -3'
miRNA:   3'- uACGGCA-----GCUGCUGgcGCGGU--UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 7967 0.71 0.358887
Target:  5'- -cGCCGcuuaUGACGAUCGCGCgGAGCa- -3'
miRNA:   3'- uaCGGCa---GCUGCUGGCGCGgUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 24283 0.77 0.141729
Target:  5'- -cGCCGccUCGGCGugCGCGCCGAucACGu -3'
miRNA:   3'- uaCGGC--AGCUGCugGCGCGGUU--UGCu -5'
12782 5' -56.9 NC_003387.1 + 33907 0.7 0.393799
Target:  5'- --cCCGUCGGCGAuCUGCGCgCAAACc- -3'
miRNA:   3'- uacGGCAGCUGCU-GGCGCG-GUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 37306 0.79 0.101535
Target:  5'- -cGCgGUCGuCGACCGCGCCGacgugccgugGACGAg -3'
miRNA:   3'- uaCGgCAGCuGCUGGCGCGGU----------UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 17995 0.71 0.358887
Target:  5'- gGUGCCGUCGAguuUCGCGCaCAAGCa- -3'
miRNA:   3'- -UACGGCAGCUgcuGGCGCG-GUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 14561 0.7 0.3929
Target:  5'- -gGCgGUCGACG-CCGCcuggccguucuacGCCAAGCGc -3'
miRNA:   3'- uaCGgCAGCUGCuGGCG-------------CGGUUUGCu -5'
12782 5' -56.9 NC_003387.1 + 33055 0.72 0.303166
Target:  5'- cGUGCCGcacCGG-GugCGCGCCAAGCGc -3'
miRNA:   3'- -UACGGCa--GCUgCugGCGCGGUUUGCu -5'
12782 5' -56.9 NC_003387.1 + 18909 0.72 0.288518
Target:  5'- -cGCCGUCGGCGG-CGCGCUcGACc- -3'
miRNA:   3'- uaCGGCAGCUGCUgGCGCGGuUUGcu -5'
12782 5' -56.9 NC_003387.1 + 20989 0.73 0.254344
Target:  5'- aAUGCCGcgauagcucucgUCGGCGACaGCGCCGGGCu- -3'
miRNA:   3'- -UACGGC------------AGCUGCUGgCGCGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 51305 0.74 0.217802
Target:  5'- -aGCuCGUCGGCGGCgGCGCCucGCa- -3'
miRNA:   3'- uaCG-GCAGCUGCUGgCGCGGuuUGcu -5'
12782 5' -56.9 NC_003387.1 + 32861 0.68 0.469841
Target:  5'- -cG-CGUCGcCGACUGCGCCGacugccagcucGACGAc -3'
miRNA:   3'- uaCgGCAGCuGCUGGCGCGGU-----------UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 46351 0.69 0.459918
Target:  5'- -aGgCGUCGcccGCGGCCGagGCCAAGCGc -3'
miRNA:   3'- uaCgGCAGC---UGCUGGCg-CGGUUUGCu -5'
12782 5' -56.9 NC_003387.1 + 35814 0.69 0.421387
Target:  5'- -cGCCGUCGGCGcgaugcucucguACCcCGCCAAcacaaccaACGAa -3'
miRNA:   3'- uaCGGCAGCUGC------------UGGcGCGGUU--------UGCU- -5'
12782 5' -56.9 NC_003387.1 + 29345 0.7 0.402865
Target:  5'- -cGCCGcgcgcuucauccUCGGCGACCugaccgucagcgGCGCCGguGACGAc -3'
miRNA:   3'- uaCGGC------------AGCUGCUGG------------CGCGGU--UUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.