miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 5' -56.9 NC_003387.1 + 37808 0.73 0.235479
Target:  5'- -cGCgGUCGcagcagcgcGCGAUCGgGCCGAGCGAg -3'
miRNA:   3'- uaCGgCAGC---------UGCUGGCgCGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 9035 0.73 0.241633
Target:  5'- -cGCCGUCGGCGAuCCaCGCCAGgaucGCGu -3'
miRNA:   3'- uaCGGCAGCUGCU-GGcGCGGUU----UGCu -5'
12782 5' -56.9 NC_003387.1 + 30044 0.73 0.254344
Target:  5'- -cGCCGUCGAcaccgcccaCGAgCGCGCCcuGACGGc -3'
miRNA:   3'- uaCGGCAGCU---------GCUgGCGCGGu-UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 20989 0.73 0.254344
Target:  5'- aAUGCCGcgauagcucucgUCGGCGACaGCGCCGGGCu- -3'
miRNA:   3'- -UACGGC------------AGCUGCUGgCGCGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 41615 0.73 0.267598
Target:  5'- cGUGaUCGaguUCGACGACCGCGcCCAAGCu- -3'
miRNA:   3'- -UAC-GGC---AGCUGCUGGCGC-GGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 39068 0.73 0.267598
Target:  5'- -cGCCcUCGGCGACCGagcCGCCGccGACGGu -3'
miRNA:   3'- uaCGGcAGCUGCUGGC---GCGGU--UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 41008 0.72 0.281405
Target:  5'- -cGgCGUCGACGGCCGgGUCGAcuGCGu -3'
miRNA:   3'- uaCgGCAGCUGCUGGCgCGGUU--UGCu -5'
12782 5' -56.9 NC_003387.1 + 18909 0.72 0.288518
Target:  5'- -cGCCGUCGGCGG-CGCGCUcGACc- -3'
miRNA:   3'- uaCGGCAGCUGCUgGCGCGGuUUGcu -5'
12782 5' -56.9 NC_003387.1 + 33544 0.72 0.288518
Target:  5'- cGUGCCGUUaGCGACCGUGCgGGccGCGc -3'
miRNA:   3'- -UACGGCAGcUGCUGGCGCGgUU--UGCu -5'
12782 5' -56.9 NC_003387.1 + 31029 0.72 0.295772
Target:  5'- -cGCCGgggCGGCGGCCagcacggcaccgGCGCCGAugGc -3'
miRNA:   3'- uaCGGCa--GCUGCUGG------------CGCGGUUugCu -5'
12782 5' -56.9 NC_003387.1 + 33055 0.72 0.303166
Target:  5'- cGUGCCGcacCGG-GugCGCGCCAAGCGc -3'
miRNA:   3'- -UACGGCa--GCUgCugGCGCGGUUUGCu -5'
12782 5' -56.9 NC_003387.1 + 50292 0.72 0.303166
Target:  5'- -gGCCGUCGAgaaCGGCUGgGCCGucaacGCGAu -3'
miRNA:   3'- uaCGGCAGCU---GCUGGCgCGGUu----UGCU- -5'
12782 5' -56.9 NC_003387.1 + 2354 0.72 0.310702
Target:  5'- -cGCCGUCGGCGuCgaGCGCCAcguacGCGGu -3'
miRNA:   3'- uaCGGCAGCUGCuGg-CGCGGUu----UGCU- -5'
12782 5' -56.9 NC_003387.1 + 4856 0.72 0.310702
Target:  5'- gGUGUCGUCGuAgGACCgcuGCGCCAuaAGCGGu -3'
miRNA:   3'- -UACGGCAGC-UgCUGG---CGCGGU--UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 36718 0.71 0.318379
Target:  5'- --aCCGUCGGCGGCCGUaCCGGACc- -3'
miRNA:   3'- uacGGCAGCUGCUGGCGcGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 39749 0.71 0.326198
Target:  5'- -cGUCGUCGGUGGCCGCccgguacgagccGCCAGACGc -3'
miRNA:   3'- uaCGGCAGCUGCUGGCG------------CGGUUUGCu -5'
12782 5' -56.9 NC_003387.1 + 37659 0.71 0.326198
Target:  5'- -cGCCGUC-ACGACCaCGCCAucCGGu -3'
miRNA:   3'- uaCGGCAGcUGCUGGcGCGGUuuGCU- -5'
12782 5' -56.9 NC_003387.1 + 751 0.71 0.334159
Target:  5'- gAUGCgGUCGGCcACCGCGgCA-GCGAc -3'
miRNA:   3'- -UACGgCAGCUGcUGGCGCgGUuUGCU- -5'
12782 5' -56.9 NC_003387.1 + 29738 0.71 0.334159
Target:  5'- uUGCCGUCGuCGgcGCCGC-CCGAcACGAu -3'
miRNA:   3'- uACGGCAGCuGC--UGGCGcGGUU-UGCU- -5'
12782 5' -56.9 NC_003387.1 + 50066 0.71 0.334159
Target:  5'- cGUGUCGUCGuacagcACG-CCGCGCCGGuGCGGc -3'
miRNA:   3'- -UACGGCAGC------UGCuGGCGCGGUU-UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.