miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 5' -56.9 NC_003387.1 + 5823 0.68 0.488989
Target:  5'- -gGCCGUgcaCGACGACCucgggcuGCGCCGcagGugGGg -3'
miRNA:   3'- uaCGGCA---GCUGCUGG-------CGCGGU---UugCU- -5'
12782 5' -56.9 NC_003387.1 + 6439 0.68 0.500241
Target:  5'- -gGCCGucgaggUCGugGGCgGCGUCGccAACGAg -3'
miRNA:   3'- uaCGGC------AGCugCUGgCGCGGU--UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 6650 0.67 0.552691
Target:  5'- -gGCuCGUCGuCGACC-CGCuCAAGCGc -3'
miRNA:   3'- uaCG-GCAGCuGCUGGcGCG-GUUUGCu -5'
12782 5' -56.9 NC_003387.1 + 6786 0.69 0.440413
Target:  5'- -gGCCGUCGGCGAacacgcucgggcaCGUGCCGAcguacugcagaucggGCGGc -3'
miRNA:   3'- uaCGGCAGCUGCUg------------GCGCGGUU---------------UGCU- -5'
12782 5' -56.9 NC_003387.1 + 6886 0.67 0.563393
Target:  5'- -cGCCGUCGugGcACCGgcUGCCuaguGCGc -3'
miRNA:   3'- uaCGGCAGCugC-UGGC--GCGGuu--UGCu -5'
12782 5' -56.9 NC_003387.1 + 7054 0.66 0.60667
Target:  5'- -gGCCGcUCGcccUGACCggacaccuucgGCGCCAGGCGGc -3'
miRNA:   3'- uaCGGC-AGCu--GCUGG-----------CGCGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 7316 0.67 0.574151
Target:  5'- -gGCCGUaccUGuCGGCUGCGCuCAAGCa- -3'
miRNA:   3'- uaCGGCA---GCuGCUGGCGCG-GUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 7625 0.74 0.229456
Target:  5'- -cGgCGUCGACGACCuggcCGCCGAACa- -3'
miRNA:   3'- uaCgGCAGCUGCUGGc---GCGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 7834 0.66 0.628471
Target:  5'- uAUGCgCGccCGGCGGCUGCGUCAGcuCGGc -3'
miRNA:   3'- -UACG-GCa-GCUGCUGGCGCGGUUu-GCU- -5'
12782 5' -56.9 NC_003387.1 + 7967 0.71 0.358887
Target:  5'- -cGCCGcuuaUGACGAUCGCGCgGAGCa- -3'
miRNA:   3'- uaCGGCa---GCUGCUGGCGCGgUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 7984 0.67 0.531478
Target:  5'- gGUGCUGcgcuUCGGCGccCCG-GCCGGGCGAg -3'
miRNA:   3'- -UACGGC----AGCUGCu-GGCgCGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 8087 0.67 0.563393
Target:  5'- cUGCCgGUCGGCGccaACC-CGCCcgaGGGCGAg -3'
miRNA:   3'- uACGG-CAGCUGC---UGGcGCGG---UUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 8682 0.68 0.479872
Target:  5'- -cGCCGuUCGGCacGCCGCuGCCGAcCGAc -3'
miRNA:   3'- uaCGGC-AGCUGc-UGGCG-CGGUUuGCU- -5'
12782 5' -56.9 NC_003387.1 + 8738 0.66 0.583872
Target:  5'- -aGCCgGUCGACGugaACCGUcagcuucGCCAuGCGGg -3'
miRNA:   3'- uaCGG-CAGCUGC---UGGCG-------CGGUuUGCU- -5'
12782 5' -56.9 NC_003387.1 + 9035 0.73 0.241633
Target:  5'- -cGCCGUCGGCGAuCCaCGCCAGgaucGCGu -3'
miRNA:   3'- uaCGGCAGCUGCU-GGcGCGGUU----UGCu -5'
12782 5' -56.9 NC_003387.1 + 9469 0.69 0.440413
Target:  5'- uUGCCGUUG--GACCcgGCGCCGAACa- -3'
miRNA:   3'- uACGGCAGCugCUGG--CGCGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 9798 0.67 0.563393
Target:  5'- cAUGuuGUCGAgCGACCGgCGCUgcAGGCu- -3'
miRNA:   3'- -UACggCAGCU-GCUGGC-GCGG--UUUGcu -5'
12782 5' -56.9 NC_003387.1 + 10015 0.7 0.388423
Target:  5'- -gGCCGggCGACGACgacgacgagccgaagCGCGCCGAgggcGCGGu -3'
miRNA:   3'- uaCGGCa-GCUGCUG---------------GCGCGGUU----UGCU- -5'
12782 5' -56.9 NC_003387.1 + 10226 0.71 0.358887
Target:  5'- -aGUCGggcauccgCGACGcgaugaGCCGCGCCGAGCGc -3'
miRNA:   3'- uaCGGCa-------GCUGC------UGGCGCGGUUUGCu -5'
12782 5' -56.9 NC_003387.1 + 10686 0.7 0.393799
Target:  5'- -gGCCGccUCGGCGgugGCCGCcgguaucaaGCCGGGCGAg -3'
miRNA:   3'- uaCGGC--AGCUGC---UGGCG---------CGGUUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.