miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 5' -56.9 NC_003387.1 + 130 0.69 0.430838
Target:  5'- gAUGCgGUCGcccucGCGAuCCGCGCCGc-CGAg -3'
miRNA:   3'- -UACGgCAGC-----UGCU-GGCGCGGUuuGCU- -5'
12782 5' -56.9 NC_003387.1 + 282 0.69 0.459918
Target:  5'- -cGCCgGUCGAgugcacgaucaCGACCGaGCCGGugGAg -3'
miRNA:   3'- uaCGG-CAGCU-----------GCUGGCgCGGUUugCU- -5'
12782 5' -56.9 NC_003387.1 + 458 0.69 0.421387
Target:  5'- -cGCCG-CGGCGGCCGaCGgCGAccggcGCGAg -3'
miRNA:   3'- uaCGGCaGCUGCUGGC-GCgGUU-----UGCU- -5'
12782 5' -56.9 NC_003387.1 + 489 0.67 0.531478
Target:  5'- cUGCuCGUCG-CGAUgCGCGCCcgcguGGCGAc -3'
miRNA:   3'- uACG-GCAGCuGCUG-GCGCGGu----UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 714 0.66 0.617564
Target:  5'- -cGUCGUCGAgGGCCGacagGUCGGGCa- -3'
miRNA:   3'- uaCGGCAGCUgCUGGCg---CGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 751 0.71 0.334159
Target:  5'- gAUGCgGUCGGCcACCGCGgCA-GCGAc -3'
miRNA:   3'- -UACGgCAGCUGcUGGCGCgGUuUGCU- -5'
12782 5' -56.9 NC_003387.1 + 1472 0.67 0.552691
Target:  5'- -gGUCGUCGAgGGCCaggGCGUCGAcguCGAg -3'
miRNA:   3'- uaCGGCAGCUgCUGG---CGCGGUUu--GCU- -5'
12782 5' -56.9 NC_003387.1 + 1700 0.66 0.583872
Target:  5'- -gGCgGUCGACugGAUCGCugagcggGCCGGGCGGc -3'
miRNA:   3'- uaCGgCAGCUG--CUGGCG-------CGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 2027 0.81 0.074354
Target:  5'- gGUGCCGcCGACGGCCGCcgucGCCGAGCu- -3'
miRNA:   3'- -UACGGCaGCUGCUGGCG----CGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 2223 0.68 0.510567
Target:  5'- -cGCCGgucaGGCGGCCaGCGUCAgccaguugccGACGAc -3'
miRNA:   3'- uaCGGCag--CUGCUGG-CGCGGU----------UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 2304 0.66 0.617564
Target:  5'- -cGCCGaggCGACGAuCUGCcGCCcGACGu -3'
miRNA:   3'- uaCGGCa--GCUGCU-GGCG-CGGuUUGCu -5'
12782 5' -56.9 NC_003387.1 + 2354 0.72 0.310702
Target:  5'- -cGCCGUCGGCGuCgaGCGCCAcguacGCGGu -3'
miRNA:   3'- uaCGGCAGCUGCuGg-CGCGGUu----UGCU- -5'
12782 5' -56.9 NC_003387.1 + 3505 0.67 0.531478
Target:  5'- cUGCUGUCGaACGaACCGgCGCCAGu--- -3'
miRNA:   3'- uACGGCAGC-UGC-UGGC-GCGGUUugcu -5'
12782 5' -56.9 NC_003387.1 + 3537 0.75 0.185844
Target:  5'- -aGCaaCGUCGACGGCCGCcGCCugcGCGAc -3'
miRNA:   3'- uaCG--GCAGCUGCUGGCG-CGGuu-UGCU- -5'
12782 5' -56.9 NC_003387.1 + 3646 0.74 0.229456
Target:  5'- -cGCCGUCGAcCGGCuCGUGCCccggcuGAGCGGc -3'
miRNA:   3'- uaCGGCAGCU-GCUG-GCGCGG------UUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 3890 0.67 0.563393
Target:  5'- -cGCCGU--GCG-UCGCGCCGAGCa- -3'
miRNA:   3'- uaCGGCAgcUGCuGGCGCGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 3936 0.71 0.353841
Target:  5'- -cGCCG-CGGCGaucagcggcgagcugGCUGCGCCGAGCa- -3'
miRNA:   3'- uaCGGCaGCUGC---------------UGGCGCGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 4395 0.67 0.531478
Target:  5'- -cGCCGUCGACuACUGgcagaacgucgaCGCCGAGCu- -3'
miRNA:   3'- uaCGGCAGCUGcUGGC------------GCGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 4483 0.66 0.584954
Target:  5'- -gGCCG-CGGcCGACCGgGCgCGAcACGAu -3'
miRNA:   3'- uaCGGCaGCU-GCUGGCgCG-GUU-UGCU- -5'
12782 5' -56.9 NC_003387.1 + 4856 0.72 0.310702
Target:  5'- gGUGUCGUCGuAgGACCgcuGCGCCAuaAGCGGu -3'
miRNA:   3'- -UACGGCAGC-UgCUGG---CGCGGU--UUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.