miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 5' -56.9 NC_003387.1 + 52561 0.7 0.379572
Target:  5'- uUGCCGUCGGCcagcaggcccagcucGGCgGCGCgGAucGCGAg -3'
miRNA:   3'- uACGGCAGCUG---------------CUGgCGCGgUU--UGCU- -5'
12782 5' -56.9 NC_003387.1 + 52269 0.74 0.206657
Target:  5'- -cGCCGUCGGCcGCCGCGgC-GGCGAc -3'
miRNA:   3'- uaCGGCAGCUGcUGGCGCgGuUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 52202 0.68 0.500241
Target:  5'- -cGCUGUCGAgcaGGCCGCugagcaGCCugcuGACGAg -3'
miRNA:   3'- uaCGGCAGCUg--CUGGCG------CGGu---UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 51635 0.67 0.546299
Target:  5'- -cGCCGUCGA-GGCCcugacacuggcaauaGUGCCGcuAACGAu -3'
miRNA:   3'- uaCGGCAGCUgCUGG---------------CGCGGU--UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 51417 0.68 0.469841
Target:  5'- -cGUCGUCGACGucGCC-CGCCAGGgcguCGAg -3'
miRNA:   3'- uaCGGCAGCUGC--UGGcGCGGUUU----GCU- -5'
12782 5' -56.9 NC_003387.1 + 51305 0.74 0.217802
Target:  5'- -aGCuCGUCGGCGGCgGCGCCucGCa- -3'
miRNA:   3'- uaCG-GCAGCUGCUGgCGCGGuuUGcu -5'
12782 5' -56.9 NC_003387.1 + 51087 0.69 0.430838
Target:  5'- -gGCCGUCGuCGuccaucagccaGCaCGCGCCGAcCGAa -3'
miRNA:   3'- uaCGGCAGCuGC-----------UG-GCGCGGUUuGCU- -5'
12782 5' -56.9 NC_003387.1 + 50704 0.71 0.358887
Target:  5'- -gGCCGUCGGCGGCaccgagcaGgGCCAGcgucACGGc -3'
miRNA:   3'- uaCGGCAGCUGCUGg-------CgCGGUU----UGCU- -5'
12782 5' -56.9 NC_003387.1 + 50538 0.75 0.185844
Target:  5'- -cGCCacauGUCGGCGACCaagGCGCCGAGCu- -3'
miRNA:   3'- uaCGG----CAGCUGCUGG---CGCGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 50382 0.68 0.479872
Target:  5'- -cGCCGaCGGCGGCCucgacacCGCCGAGCu- -3'
miRNA:   3'- uaCGGCaGCUGCUGGc------GCGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 50292 0.72 0.303166
Target:  5'- -gGCCGUCGAgaaCGGCUGgGCCGucaacGCGAu -3'
miRNA:   3'- uaCGGCAGCU---GCUGGCgCGGUu----UGCU- -5'
12782 5' -56.9 NC_003387.1 + 50183 0.75 0.190867
Target:  5'- cUGCCG-CGGCGACCGCGU---GCGGa -3'
miRNA:   3'- uACGGCaGCUGCUGGCGCGguuUGCU- -5'
12782 5' -56.9 NC_003387.1 + 50151 0.7 0.402865
Target:  5'- cUGCCGUgugacCGGCGACaaCGCCAccGGCGAg -3'
miRNA:   3'- uACGGCA-----GCUGCUGgcGCGGU--UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 50066 0.71 0.334159
Target:  5'- cGUGUCGUCGuacagcACG-CCGCGCCGGuGCGGc -3'
miRNA:   3'- -UACGGCAGC------UGCuGGCGCGGUU-UGCU- -5'
12782 5' -56.9 NC_003387.1 + 49887 0.77 0.141729
Target:  5'- cAUGUCGUCGGCGugCG-GCCGuuGACGAa -3'
miRNA:   3'- -UACGGCAGCUGCugGCgCGGU--UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 49819 0.68 0.510567
Target:  5'- -cGcCCG-CGGCcuGCCGCGCCcGGCGAg -3'
miRNA:   3'- uaC-GGCaGCUGc-UGGCGCGGuUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 49571 0.68 0.510567
Target:  5'- -cGCCGagGuGCGcCCGCuGCCGGGCGGu -3'
miRNA:   3'- uaCGGCagC-UGCuGGCG-CGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 49430 0.7 0.402865
Target:  5'- -cGCCcgaGUCGGCGGCCGUGUCGGGg-- -3'
miRNA:   3'- uaCGG---CAGCUGCUGGCGCGGUUUgcu -5'
12782 5' -56.9 NC_003387.1 + 49371 1.07 0.00093
Target:  5'- gAUGCCGUCGACGACCGCGCCAAACGAg -3'
miRNA:   3'- -UACGGCAGCUGCUGGCGCGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 49194 0.68 0.479872
Target:  5'- -gGCCGUCGACGuuGCUGaGCCcgcAACGGa -3'
miRNA:   3'- uaCGGCAGCUGC--UGGCgCGGu--UUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.