miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 5' -56.9 NC_003387.1 + 49371 1.07 0.00093
Target:  5'- gAUGCCGUCGACGACCGCGCCAAACGAg -3'
miRNA:   3'- -UACGGCAGCUGCUGGCGCGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 15424 0.88 0.021352
Target:  5'- -cGCgGUCGACGACCGCGCC-GACGAg -3'
miRNA:   3'- uaCGgCAGCUGCUGGCGCGGuUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 2027 0.81 0.074354
Target:  5'- gGUGCCGcCGACGGCCGCcgucGCCGAGCu- -3'
miRNA:   3'- -UACGGCaGCUGCUGGCG----CGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 37306 0.79 0.101535
Target:  5'- -cGCgGUCGuCGACCGCGCCGacgugccgugGACGAg -3'
miRNA:   3'- uaCGgCAGCuGCUGGCGCGGU----------UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 39833 0.77 0.130489
Target:  5'- -cGCCGUCGA-GGCCGCucacguugacGCCAGACGGc -3'
miRNA:   3'- uaCGGCAGCUgCUGGCG----------CGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 24283 0.77 0.141729
Target:  5'- -cGCCGccUCGGCGugCGCGCCGAucACGu -3'
miRNA:   3'- uaCGGC--AGCUGCugGCGCGGUU--UGCu -5'
12782 5' -56.9 NC_003387.1 + 49887 0.77 0.141729
Target:  5'- cAUGUCGUCGGCGugCG-GCCGuuGACGAa -3'
miRNA:   3'- -UACGGCAGCUGCugGCgCGGU--UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 27536 0.75 0.184359
Target:  5'- cUGCCG-CGGCGgcggcgccggggccACCGCGCCGAGcCGAa -3'
miRNA:   3'- uACGGCaGCUGC--------------UGGCGCGGUUU-GCU- -5'
12782 5' -56.9 NC_003387.1 + 50538 0.75 0.185844
Target:  5'- -cGCCacauGUCGGCGACCaagGCGCCGAGCu- -3'
miRNA:   3'- uaCGG----CAGCUGCUGG---CGCGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 3537 0.75 0.185844
Target:  5'- -aGCaaCGUCGACGGCCGCcGCCugcGCGAc -3'
miRNA:   3'- uaCG--GCAGCUGCUGGCG-CGGuu-UGCU- -5'
12782 5' -56.9 NC_003387.1 + 50183 0.75 0.190867
Target:  5'- cUGCCG-CGGCGACCGCGU---GCGGa -3'
miRNA:   3'- uACGGCaGCUGCUGGCGCGguuUGCU- -5'
12782 5' -56.9 NC_003387.1 + 40718 0.75 0.196009
Target:  5'- -cGCCGugUCGACcaGGCCGCGCCAcACGu -3'
miRNA:   3'- uaCGGC--AGCUG--CUGGCGCGGUuUGCu -5'
12782 5' -56.9 NC_003387.1 + 28610 0.75 0.201272
Target:  5'- -aGCUGcCGACGcCCGCauGCCAGGCGAu -3'
miRNA:   3'- uaCGGCaGCUGCuGGCG--CGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 17439 0.74 0.205029
Target:  5'- cUGCUGUCGGCGACCugguacggaaucguGCGCagcaaGGACGAu -3'
miRNA:   3'- uACGGCAGCUGCUGG--------------CGCGg----UUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 23004 0.74 0.206657
Target:  5'- cUGCCGUCGuCGGCCugggcgcCGCCGAGCGc -3'
miRNA:   3'- uACGGCAGCuGCUGGc------GCGGUUUGCu -5'
12782 5' -56.9 NC_003387.1 + 52269 0.74 0.206657
Target:  5'- -cGCCGUCGGCcGCCGCGgC-GGCGAc -3'
miRNA:   3'- uaCGGCAGCUGcUGGCGCgGuUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 24507 0.74 0.217802
Target:  5'- -aGCCGUCG-CGGCUGCGCUugcCGAg -3'
miRNA:   3'- uaCGGCAGCuGCUGGCGCGGuuuGCU- -5'
12782 5' -56.9 NC_003387.1 + 51305 0.74 0.217802
Target:  5'- -aGCuCGUCGGCGGCgGCGCCucGCa- -3'
miRNA:   3'- uaCG-GCAGCUGCUGgCGCGGuuUGcu -5'
12782 5' -56.9 NC_003387.1 + 3646 0.74 0.229456
Target:  5'- -cGCCGUCGAcCGGCuCGUGCCccggcuGAGCGGc -3'
miRNA:   3'- uaCGGCAGCU-GCUG-GCGCGG------UUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 7625 0.74 0.229456
Target:  5'- -cGgCGUCGACGACCuggcCGCCGAACa- -3'
miRNA:   3'- uaCgGCAGCUGCUGGc---GCGGUUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.