miRNA display CGI


Results 1 - 20 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12782 5' -56.9 NC_003387.1 + 2027 0.81 0.074354
Target:  5'- gGUGCCGcCGACGGCCGCcgucGCCGAGCu- -3'
miRNA:   3'- -UACGGCaGCUGCUGGCG----CGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 7967 0.71 0.358887
Target:  5'- -cGCCGcuuaUGACGAUCGCGCgGAGCa- -3'
miRNA:   3'- uaCGGCa---GCUGCUGGCGCGgUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 18734 0.7 0.37607
Target:  5'- -aGCuCGUCGuCGACCGCGaCCcgcuGCGGc -3'
miRNA:   3'- uaCG-GCAGCuGCUGGCGC-GGuu--UGCU- -5'
12782 5' -56.9 NC_003387.1 + 28227 0.66 0.639381
Target:  5'- -aGCCG-CGACGGCuCGaccgagcagauCGUCGAGCGGu -3'
miRNA:   3'- uaCGGCaGCUGCUG-GC-----------GCGGUUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 51305 0.74 0.217802
Target:  5'- -aGCuCGUCGGCGGCgGCGCCucGCa- -3'
miRNA:   3'- uaCG-GCAGCUGCUGgCGCGGuuUGcu -5'
12782 5' -56.9 NC_003387.1 + 3646 0.74 0.229456
Target:  5'- -cGCCGUCGAcCGGCuCGUGCCccggcuGAGCGGc -3'
miRNA:   3'- uaCGGCAGCU-GCUG-GCGCGG------UUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 20989 0.73 0.254344
Target:  5'- aAUGCCGcgauagcucucgUCGGCGACaGCGCCGGGCu- -3'
miRNA:   3'- -UACGGC------------AGCUGCUGgCGCGGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 30044 0.73 0.254344
Target:  5'- -cGCCGUCGAcaccgcccaCGAgCGCGCCcuGACGGc -3'
miRNA:   3'- uaCGGCAGCU---------GCUgGCGCGGu-UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 18909 0.72 0.288518
Target:  5'- -cGCCGUCGGCGG-CGCGCUcGACc- -3'
miRNA:   3'- uaCGGCAGCUGCUgGCGCGGuUUGcu -5'
12782 5' -56.9 NC_003387.1 + 10226 0.71 0.358887
Target:  5'- -aGUCGggcauccgCGACGcgaugaGCCGCGCCGAGCGc -3'
miRNA:   3'- uaCGGCa-------GCUGC------UGGCGCGGUUUGCu -5'
12782 5' -56.9 NC_003387.1 + 50292 0.72 0.303166
Target:  5'- -gGCCGUCGAgaaCGGCUGgGCCGucaacGCGAu -3'
miRNA:   3'- uaCGGCAGCU---GCUGGCgCGGUu----UGCU- -5'
12782 5' -56.9 NC_003387.1 + 41008 0.72 0.281405
Target:  5'- -cGgCGUCGACGGCCGgGUCGAcuGCGu -3'
miRNA:   3'- uaCgGCAGCUGCUGGCgCGGUU--UGCu -5'
12782 5' -56.9 NC_003387.1 + 37306 0.79 0.101535
Target:  5'- -cGCgGUCGuCGACCGCGCCGacgugccgugGACGAg -3'
miRNA:   3'- uaCGgCAGCuGCUGGCGCGGU----------UUGCU- -5'
12782 5' -56.9 NC_003387.1 + 33055 0.72 0.303166
Target:  5'- cGUGCCGcacCGG-GugCGCGCCAAGCGc -3'
miRNA:   3'- -UACGGCa--GCUgCugGCGCGGUUUGCu -5'
12782 5' -56.9 NC_003387.1 + 24283 0.77 0.141729
Target:  5'- -cGCCGccUCGGCGugCGCGCCGAucACGu -3'
miRNA:   3'- uaCGGC--AGCUGCugGCGCGGUU--UGCu -5'
12782 5' -56.9 NC_003387.1 + 41615 0.73 0.267598
Target:  5'- cGUGaUCGaguUCGACGACCGCGcCCAAGCu- -3'
miRNA:   3'- -UAC-GGC---AGCUGCUGGCGC-GGUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 41930 0.71 0.342261
Target:  5'- uGUGCCGcCGACG-CCGaCGaCCcGACGAu -3'
miRNA:   3'- -UACGGCaGCUGCuGGC-GC-GGuUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 17995 0.71 0.358887
Target:  5'- gGUGCCGUCGAguuUCGCGCaCAAGCa- -3'
miRNA:   3'- -UACGGCAGCUgcuGGCGCG-GUUUGcu -5'
12782 5' -56.9 NC_003387.1 + 17439 0.74 0.205029
Target:  5'- cUGCUGUCGGCGACCugguacggaaucguGCGCagcaaGGACGAu -3'
miRNA:   3'- uACGGCAGCUGCUGG--------------CGCGg----UUUGCU- -5'
12782 5' -56.9 NC_003387.1 + 37808 0.73 0.235479
Target:  5'- -cGCgGUCGcagcagcgcGCGAUCGgGCCGAGCGAg -3'
miRNA:   3'- uaCGgCAGC---------UGCUGGCgCGGUUUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.