miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12783 3' -56 NC_003387.1 + 27403 0.7 0.396742
Target:  5'- -cCGGgaUGCCGUUGgGGCCGUagcacacuggcUGCCa -3'
miRNA:   3'- uuGCUgaACGGCAACaCCGGCA-----------GCGG- -5'
12783 3' -56 NC_003387.1 + 27648 0.66 0.667527
Target:  5'- uGCGugUUcacgucauagacGCCGc--UGGCCGUCaGCCg -3'
miRNA:   3'- uUGCugAA------------CGGCaacACCGGCAG-CGG- -5'
12783 3' -56 NC_003387.1 + 29592 0.67 0.612497
Target:  5'- cGAUGACaccgUUGCCGgUGagGGUCG-CGCCg -3'
miRNA:   3'- -UUGCUG----AACGGCaACa-CCGGCaGCGG- -5'
12783 3' -56 NC_003387.1 + 29629 0.75 0.212037
Target:  5'- cAGCGGCUUGCCGUacaggaaUGU-GCUGUCgGCCu -3'
miRNA:   3'- -UUGCUGAACGGCA-------ACAcCGGCAG-CGG- -5'
12783 3' -56 NC_003387.1 + 30218 0.69 0.494351
Target:  5'- cGACGucgaGCgcGCCGccGaGGCCGUCGCCc -3'
miRNA:   3'- -UUGC----UGaaCGGCaaCaCCGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 30429 0.69 0.484073
Target:  5'- aGGCGGCUUGCCGgguuUGuUGGCgcccugGUCuGCCa -3'
miRNA:   3'- -UUGCUGAACGGCa---AC-ACCGg-----CAG-CGG- -5'
12783 3' -56 NC_003387.1 + 30629 0.67 0.609196
Target:  5'- gGAUGGC--GCCGUacGUGccccacgcgcuaccGCCGUCGCCa -3'
miRNA:   3'- -UUGCUGaaCGGCAa-CAC--------------CGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 31010 0.67 0.612497
Target:  5'- cACGACcagGUCGgcGcgGGCCGcgcUCGCCg -3'
miRNA:   3'- uUGCUGaa-CGGCaaCa-CCGGC---AGCGG- -5'
12783 3' -56 NC_003387.1 + 31934 0.68 0.553559
Target:  5'- aAACcGCUUGCCGUUaccaaagccgagGGCCGacgCGCCu -3'
miRNA:   3'- -UUGcUGAACGGCAAca----------CCGGCa--GCGG- -5'
12783 3' -56 NC_003387.1 + 32238 0.77 0.145423
Target:  5'- cGCGACgagcugGCCGaccgccUGGCCGUCGCCg -3'
miRNA:   3'- uUGCUGaa----CGGCaac---ACCGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 33414 0.68 0.557878
Target:  5'- cGCGAg--GCCGUUGUgcGGCUGU-GCCu -3'
miRNA:   3'- uUGCUgaaCGGCAACA--CCGGCAgCGG- -5'
12783 3' -56 NC_003387.1 + 35069 0.67 0.568715
Target:  5'- cACGcCUUGCCcUUGUcggucgGGCCGaggcUCGCCu -3'
miRNA:   3'- uUGCuGAACGGcAACA------CCGGC----AGCGG- -5'
12783 3' -56 NC_003387.1 + 35358 0.66 0.667527
Target:  5'- aGACaGGCUcGCCGcaccUGaucGCCGUCGCCu -3'
miRNA:   3'- -UUG-CUGAaCGGCa---ACac-CGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 35441 0.66 0.667527
Target:  5'- -cCGGCUguuaGCUGUcGgGGUCGUCGUCg -3'
miRNA:   3'- uuGCUGAa---CGGCAaCaCCGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 38574 0.67 0.605898
Target:  5'- cGGCGAggugccacacCUUGCCGUUagauggGUGGCaguaauaccacuugGUCGCCg -3'
miRNA:   3'- -UUGCU----------GAACGGCAA------CACCGg-------------CAGCGG- -5'
12783 3' -56 NC_003387.1 + 39402 0.66 0.634526
Target:  5'- gAACGuCUugcccaggucgcUGCCGUcGaGGCCGcCGCCc -3'
miRNA:   3'- -UUGCuGA------------ACGGCAaCaCCGGCaGCGG- -5'
12783 3' -56 NC_003387.1 + 39452 0.73 0.29729
Target:  5'- -uCGACUUGCCcuugGUGGCC-UUGCCc -3'
miRNA:   3'- uuGCUGAACGGcaa-CACCGGcAGCGG- -5'
12783 3' -56 NC_003387.1 + 41401 0.67 0.568715
Target:  5'- gAACGACUggacaaucucGCCGagcUUGccGCUGUCGCCg -3'
miRNA:   3'- -UUGCUGAa---------CGGC---AACacCGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 41912 0.67 0.612497
Target:  5'- gGACGccaGCUcgUGCCG-UGUGccGCCGaCGCCg -3'
miRNA:   3'- -UUGC---UGA--ACGGCaACAC--CGGCaGCGG- -5'
12783 3' -56 NC_003387.1 + 42038 0.66 0.678475
Target:  5'- cGGCGGCcaccGCCGagGcGGCCGUgGUCg -3'
miRNA:   3'- -UUGCUGaa--CGGCaaCaCCGGCAgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.