miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12783 3' -56 NC_003387.1 + 12284 0.66 0.667527
Target:  5'- cGGCG-CUgucagGCCGggccgGGCCGguUCGCCg -3'
miRNA:   3'- -UUGCuGAa----CGGCaaca-CCGGC--AGCGG- -5'
12783 3' -56 NC_003387.1 + 29629 0.75 0.212037
Target:  5'- cAGCGGCUUGCCGUacaggaaUGU-GCUGUCgGCCu -3'
miRNA:   3'- -UUGCUGAACGGCA-------ACAcCGGCAG-CGG- -5'
12783 3' -56 NC_003387.1 + 31934 0.68 0.553559
Target:  5'- aAACcGCUUGCCGUUaccaaagccgagGGCCGacgCGCCu -3'
miRNA:   3'- -UUGcUGAACGGCAAca----------CCGGCa--GCGG- -5'
12783 3' -56 NC_003387.1 + 13414 0.68 0.557878
Target:  5'- cACGccCUcGCCGUUGUcGGCCGggggcUUGCCg -3'
miRNA:   3'- uUGCu-GAaCGGCAACA-CCGGC-----AGCGG- -5'
12783 3' -56 NC_003387.1 + 35069 0.67 0.568715
Target:  5'- cACGcCUUGCCcUUGUcggucgGGCCGaggcUCGCCu -3'
miRNA:   3'- uUGCuGAACGGcAACA------CCGGC----AGCGG- -5'
12783 3' -56 NC_003387.1 + 27648 0.66 0.667527
Target:  5'- uGCGugUUcacgucauagacGCCGc--UGGCCGUCaGCCg -3'
miRNA:   3'- uUGCugAA------------CGGCaacACCGGCAG-CGG- -5'
12783 3' -56 NC_003387.1 + 206 0.66 0.656546
Target:  5'- cGGCGGCUUGUCGcucUUGUcGCgGUUGCa -3'
miRNA:   3'- -UUGCUGAACGGC---AACAcCGgCAGCGg -5'
12783 3' -56 NC_003387.1 + 26200 0.66 0.645542
Target:  5'- uGACGGCUcGUCGUcGUcGGCC-UCGCa -3'
miRNA:   3'- -UUGCUGAaCGGCAaCA-CCGGcAGCGg -5'
12783 3' -56 NC_003387.1 + 39402 0.66 0.634526
Target:  5'- gAACGuCUugcccaggucgcUGCCGUcGaGGCCGcCGCCc -3'
miRNA:   3'- -UUGCuGA------------ACGGCAaCaCCGGCaGCGG- -5'
12783 3' -56 NC_003387.1 + 31010 0.67 0.612497
Target:  5'- cACGACcagGUCGgcGcgGGCCGcgcUCGCCg -3'
miRNA:   3'- uUGCUGaa-CGGCaaCa-CCGGC---AGCGG- -5'
12783 3' -56 NC_003387.1 + 29592 0.67 0.612497
Target:  5'- cGAUGACaccgUUGCCGgUGagGGUCG-CGCCg -3'
miRNA:   3'- -UUGCUG----AACGGCaACa-CCGGCaGCGG- -5'
12783 3' -56 NC_003387.1 + 18967 0.67 0.612497
Target:  5'- cGCGGCgccGCCGUUGcccuuGCCGgggUGCCg -3'
miRNA:   3'- uUGCUGaa-CGGCAACac---CGGCa--GCGG- -5'
12783 3' -56 NC_003387.1 + 17016 0.67 0.612497
Target:  5'- cAGCGGCagGCCGUcGUcGCCGUacgGCCc -3'
miRNA:   3'- -UUGCUGaaCGGCAaCAcCGGCAg--CGG- -5'
12783 3' -56 NC_003387.1 + 2555 0.67 0.612497
Target:  5'- gGAUGaACUcGCCG--GUGGCguUGUCGCCg -3'
miRNA:   3'- -UUGC-UGAaCGGCaaCACCG--GCAGCGG- -5'
12783 3' -56 NC_003387.1 + 38574 0.67 0.605898
Target:  5'- cGGCGAggugccacacCUUGCCGUUagauggGUGGCaguaauaccacuugGUCGCCg -3'
miRNA:   3'- -UUGCU----------GAACGGCAA------CACCGg-------------CAGCGG- -5'
12783 3' -56 NC_003387.1 + 48543 0.67 0.601503
Target:  5'- gGGCGGCUgauacgaGCCGUUGcGGuCUGgcacCGCCa -3'
miRNA:   3'- -UUGCUGAa------CGGCAACaCC-GGCa---GCGG- -5'
12783 3' -56 NC_003387.1 + 49439 0.67 0.590536
Target:  5'- cGGCGGCcgUGUCGg---GGUCGUCGUCc -3'
miRNA:   3'- -UUGCUGa-ACGGCaacaCCGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 26800 0.67 0.590536
Target:  5'- -uCGACgagGCCGcgcugGUGGUCGgugagcgCGCCg -3'
miRNA:   3'- uuGCUGaa-CGGCaa---CACCGGCa------GCGG- -5'
12783 3' -56 NC_003387.1 + 9462 0.67 0.579604
Target:  5'- cACGcuCUUGCCGUUGgacCCGgCGCCg -3'
miRNA:   3'- uUGCu-GAACGGCAACaccGGCaGCGG- -5'
12783 3' -56 NC_003387.1 + 41401 0.67 0.568715
Target:  5'- gAACGACUggacaaucucGCCGagcUUGccGCUGUCGCCg -3'
miRNA:   3'- -UUGCUGAa---------CGGC---AACacCGGCAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.