miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12783 5' -54.6 NC_003387.1 + 34120 0.67 0.670934
Target:  5'- gGCGGCGUcGAcGUCGCGGUGCgCGa--- -3'
miRNA:   3'- -CGCUGUA-CUuCAGUGCCGCG-GCcuag -5'
12783 5' -54.6 NC_003387.1 + 34490 0.66 0.756691
Target:  5'- uGCGGCcuacGAGUacgcccgccgcUGCGGCGCCGcGAUCc -3'
miRNA:   3'- -CGCUGuac-UUCA-----------GUGCCGCGGC-CUAG- -5'
12783 5' -54.6 NC_003387.1 + 36008 0.67 0.681901
Target:  5'- uCGACGgcGAGGUCGUGGUGCgccgcaagCGGAUCa -3'
miRNA:   3'- cGCUGUa-CUUCAGUGCCGCG--------GCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 36361 0.68 0.637856
Target:  5'- cUGAUA-GAGGUUGuccaagcccuCGGCGCCGGGUUg -3'
miRNA:   3'- cGCUGUaCUUCAGU----------GCCGCGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 39631 0.68 0.637856
Target:  5'- gGCGGCAUGAGccucgacccgguGUCGCgcauGGCGUgGGAg- -3'
miRNA:   3'- -CGCUGUACUU------------CAGUG----CCGCGgCCUag -5'
12783 5' -54.6 NC_003387.1 + 41694 0.72 0.389785
Target:  5'- cCGACccGgcGUCGCGGCGCCGa--- -3'
miRNA:   3'- cGCUGuaCuuCAGUGCCGCGGCcuag -5'
12783 5' -54.6 NC_003387.1 + 43117 0.69 0.571815
Target:  5'- cGCGACGg-----CGCGGCGCCGcGGUg -3'
miRNA:   3'- -CGCUGUacuucaGUGCCGCGGC-CUAg -5'
12783 5' -54.6 NC_003387.1 + 43222 0.68 0.615761
Target:  5'- gGCGAgGUGAcgcaccacguGUUGCcguuccuguucGGCGCCGGGUCc -3'
miRNA:   3'- -CGCUgUACUu---------CAGUG-----------CCGCGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 45132 0.69 0.593723
Target:  5'- gGUGACGcauuucGAGG-CGCGGCGCuCGGAg- -3'
miRNA:   3'- -CGCUGUa-----CUUCaGUGCCGCG-GCCUag -5'
12783 5' -54.6 NC_003387.1 + 45233 0.66 0.756691
Target:  5'- gGCGugGUcGGAGUCGauGgGCUGGAc- -3'
miRNA:   3'- -CGCugUA-CUUCAGUgcCgCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 46730 0.67 0.714468
Target:  5'- gGCGA-GUGGAcgaugCACGGCggcaaccugGCCGGGUCg -3'
miRNA:   3'- -CGCUgUACUUca---GUGCCG---------CGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 47950 1.12 0.000707
Target:  5'- uGCGACAUGAAGUCACGGCGCCGGAUCg -3'
miRNA:   3'- -CGCUGUACUUCAGUGCCGCGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 48063 0.66 0.746299
Target:  5'- gGCGGCGUc-GGcCGCuuGGCGCCGGGc- -3'
miRNA:   3'- -CGCUGUAcuUCaGUG--CCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 48620 0.67 0.692819
Target:  5'- cCGACuu---GUaCACGGCGCCgcGGGUCg -3'
miRNA:   3'- cGCUGuacuuCA-GUGCCGCGG--CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 48827 0.67 0.670934
Target:  5'- gGCGGuCA--GGGUCgggcaGCGGCGCCGGuUCc -3'
miRNA:   3'- -CGCU-GUacUUCAG-----UGCCGCGGCCuAG- -5'
12783 5' -54.6 NC_003387.1 + 49201 0.76 0.225145
Target:  5'- gGCGGCGgcgGggG-CACuGGCGCCGGuUCg -3'
miRNA:   3'- -CGCUGUa--CuuCaGUG-CCGCGGCCuAG- -5'
12783 5' -54.6 NC_003387.1 + 50221 0.71 0.466406
Target:  5'- cGCGuCAccUGGAcUUACGGCGCCuaccGGAUCg -3'
miRNA:   3'- -CGCuGU--ACUUcAGUGCCGCGG----CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 52527 0.67 0.692819
Target:  5'- cGCGGCAau--GUCGCGG-GCCGaGUCg -3'
miRNA:   3'- -CGCUGUacuuCAGUGCCgCGGCcUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.