miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12783 5' -54.6 NC_003387.1 + 20226 0.75 0.284133
Target:  5'- aGCGGCA-GucGUCgcaccACGGCGCCgGGGUCg -3'
miRNA:   3'- -CGCUGUaCuuCAG-----UGCCGCGG-CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 20849 0.75 0.256523
Target:  5'- gGCGACggGAuaGGUCAgcaaGGCGCCGG-UCa -3'
miRNA:   3'- -CGCUGuaCU--UCAGUg---CCGCGGCCuAG- -5'
12783 5' -54.6 NC_003387.1 + 21587 0.67 0.670934
Target:  5'- cGCGGCAUcagcGAGGccgaCGCGGCGCUGcuggugcacauGAUCg -3'
miRNA:   3'- -CGCUGUA----CUUCa---GUGCCGCGGC-----------CUAG- -5'
12783 5' -54.6 NC_003387.1 + 21953 0.67 0.692819
Target:  5'- gGCGGCA-GgcGUCuGCGGCGCUGu-UCa -3'
miRNA:   3'- -CGCUGUaCuuCAG-UGCCGCGGCcuAG- -5'
12783 5' -54.6 NC_003387.1 + 22090 0.66 0.766956
Target:  5'- aGCG-CGUGggGcacgUACGGCGCCa---- -3'
miRNA:   3'- -CGCuGUACuuCa---GUGCCGCGGccuag -5'
12783 5' -54.6 NC_003387.1 + 22179 0.67 0.667636
Target:  5'- gGCGGCGguccauGUCGgGGCGCCcguugcacuugucgGGGUCg -3'
miRNA:   3'- -CGCUGUacuu--CAGUgCCGCGG--------------CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 22304 0.68 0.615761
Target:  5'- cCGGCA---AGcCGCcugguGGCGCCGGAUCa -3'
miRNA:   3'- cGCUGUacuUCaGUG-----CCGCGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 22920 0.72 0.389785
Target:  5'- cGCGACc-GAAauuaGCGGCGCCGGAUa -3'
miRNA:   3'- -CGCUGuaCUUcag-UGCCGCGGCCUAg -5'
12783 5' -54.6 NC_003387.1 + 23338 0.71 0.446501
Target:  5'- gGCGAgAUcGAGGUCGucacCGGCGCCGcugacGGUCa -3'
miRNA:   3'- -CGCUgUA-CUUCAGU----GCCGCGGC-----CUAG- -5'
12783 5' -54.6 NC_003387.1 + 23815 0.68 0.604729
Target:  5'- cGCGcagcagauACGUGAGGgCGCcGCGCCGGGacUCg -3'
miRNA:   3'- -CGC--------UGUACUUCaGUGcCGCGGCCU--AG- -5'
12783 5' -54.6 NC_003387.1 + 25182 0.67 0.697171
Target:  5'- gGCGGuCAgcGAGGcucauacaggcaaccUCGCGGCggcgGCCGGAUCu -3'
miRNA:   3'- -CGCU-GUa-CUUC---------------AGUGCCG----CGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 26559 0.67 0.658829
Target:  5'- aCGACAUGAcGcCcuugcggGCGGUGCCGGGc- -3'
miRNA:   3'- cGCUGUACUuCaG-------UGCCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 28358 0.68 0.615761
Target:  5'- cGCGAaagAUGuucauGUCgAUGGCGCCuGGAUCc -3'
miRNA:   3'- -CGCUg--UACuu---CAG-UGCCGCGG-CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 28888 0.67 0.659931
Target:  5'- uGCGGCGgcuuAGgCGCgGGCGCCGGGc- -3'
miRNA:   3'- -CGCUGUacu-UCaGUG-CCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 29364 0.74 0.321879
Target:  5'- gGCGACcUGAccGUCAgCGGCGCCGGu-- -3'
miRNA:   3'- -CGCUGuACUu-CAGU-GCCGCGGCCuag -5'
12783 5' -54.6 NC_003387.1 + 30245 0.67 0.681901
Target:  5'- uUGGCcgGGucGUCGggguCGGCGCCgGGGUCg -3'
miRNA:   3'- cGCUGuaCUu-CAGU----GCCGCGG-CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 31470 0.68 0.604729
Target:  5'- cCGACuccucGUCGCGGCGCaccaugccgacCGGAUCg -3'
miRNA:   3'- cGCUGuacuuCAGUGCCGCG-----------GCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 32711 0.67 0.670934
Target:  5'- aUGACAcagGGcuUCACGGCGCaCGGcgCg -3'
miRNA:   3'- cGCUGUa--CUucAGUGCCGCG-GCCuaG- -5'
12783 5' -54.6 NC_003387.1 + 32718 0.71 0.436727
Target:  5'- --uACGUGAGGUCgaACGGCGCCGcGGa- -3'
miRNA:   3'- cgcUGUACUUCAG--UGCCGCGGC-CUag -5'
12783 5' -54.6 NC_003387.1 + 33467 0.69 0.582748
Target:  5'- gGCGGCc-GAAGUCGCcgaggcggucGGCGCCcGcGAUCg -3'
miRNA:   3'- -CGCUGuaCUUCAGUG----------CCGCGG-C-CUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.