miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12783 5' -54.6 NC_003387.1 + 10638 0.67 0.659931
Target:  5'- cGCGGCgGUGAAGggUACGGCGuUCGGccUCg -3'
miRNA:   3'- -CGCUG-UACUUCa-GUGCCGC-GGCCu-AG- -5'
12783 5' -54.6 NC_003387.1 + 43222 0.68 0.615761
Target:  5'- gGCGAgGUGAcgcaccacguGUUGCcguuccuguucGGCGCCGGGUCc -3'
miRNA:   3'- -CGCUgUACUu---------CAGUG-----------CCGCGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 34490 0.66 0.756691
Target:  5'- uGCGGCcuacGAGUacgcccgccgcUGCGGCGCCGcGAUCc -3'
miRNA:   3'- -CGCUGuac-UUCA-----------GUGCCGCGGC-CUAG- -5'
12783 5' -54.6 NC_003387.1 + 36008 0.67 0.681901
Target:  5'- uCGACGgcGAGGUCGUGGUGCgccgcaagCGGAUCa -3'
miRNA:   3'- cGCUGUa-CUUCAGUGCCGCG--------GCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 22304 0.68 0.615761
Target:  5'- cCGGCA---AGcCGCcugguGGCGCCGGAUCa -3'
miRNA:   3'- cGCUGUacuUCaGUG-----CCGCGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 7824 0.66 0.766956
Target:  5'- gGCGGCc-GAGGUCGCccGGCGCgcaggCGGaAUCg -3'
miRNA:   3'- -CGCUGuaCUUCAGUG--CCGCG-----GCC-UAG- -5'
12783 5' -54.6 NC_003387.1 + 11033 0.68 0.615761
Target:  5'- gGCGaACAUGAAggccgcuauGUCGCgguucGGCGCCGaGGUUa -3'
miRNA:   3'- -CGC-UGUACUU---------CAGUG-----CCGCGGC-CUAG- -5'
12783 5' -54.6 NC_003387.1 + 45132 0.69 0.593723
Target:  5'- gGUGACGcauuucGAGG-CGCGGCGCuCGGAg- -3'
miRNA:   3'- -CGCUGUa-----CUUCaGUGCCGCG-GCCUag -5'
12783 5' -54.6 NC_003387.1 + 26559 0.67 0.658829
Target:  5'- aCGACAUGAcGcCcuugcggGCGGUGCCGGGc- -3'
miRNA:   3'- cGCUGUACUuCaG-------UGCCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 39631 0.68 0.637856
Target:  5'- gGCGGCAUGAGccucgacccgguGUCGCgcauGGCGUgGGAg- -3'
miRNA:   3'- -CGCUGUACUU------------CAGUG----CCGCGgCCUag -5'
12783 5' -54.6 NC_003387.1 + 8172 0.67 0.670934
Target:  5'- -aGAagcccuUGAAGUCuuucgagcccuGCGGCGCCGGGc- -3'
miRNA:   3'- cgCUgu----ACUUCAG-----------UGCCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 28888 0.67 0.659931
Target:  5'- uGCGGCGgcuuAGgCGCgGGCGCCGGGc- -3'
miRNA:   3'- -CGCUGUacu-UCaGUG-CCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 22179 0.67 0.667636
Target:  5'- gGCGGCGguccauGUCGgGGCGCCcguugcacuugucgGGGUCg -3'
miRNA:   3'- -CGCUGUacuu--CAGUgCCGCGG--------------CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 20226 0.75 0.284133
Target:  5'- aGCGGCA-GucGUCgcaccACGGCGCCgGGGUCg -3'
miRNA:   3'- -CGCUGUaCuuCAG-----UGCCGCGG-CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 48620 0.67 0.692819
Target:  5'- cCGACuu---GUaCACGGCGCCgcGGGUCg -3'
miRNA:   3'- cGCUGuacuuCA-GUGCCGCGG--CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 20849 0.75 0.256523
Target:  5'- gGCGACggGAuaGGUCAgcaaGGCGCCGG-UCa -3'
miRNA:   3'- -CGCUGuaCU--UCAGUg---CCGCGGCCuAG- -5'
12783 5' -54.6 NC_003387.1 + 6033 0.76 0.243561
Target:  5'- aGCGGCAcGAGGUgcggCAgGGCGCCGGGc- -3'
miRNA:   3'- -CGCUGUaCUUCA----GUgCCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 49201 0.76 0.225145
Target:  5'- gGCGGCGgcgGggG-CACuGGCGCCGGuUCg -3'
miRNA:   3'- -CGCUGUa--CuuCaGUG-CCGCGGCCuAG- -5'
12783 5' -54.6 NC_003387.1 + 25182 0.67 0.697171
Target:  5'- gGCGGuCAgcGAGGcucauacaggcaaccUCGCGGCggcgGCCGGAUCu -3'
miRNA:   3'- -CGCU-GUa-CUUC---------------AGUGCCG----CGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 47950 1.12 0.000707
Target:  5'- uGCGACAUGAAGUCACGGCGCCGGAUCg -3'
miRNA:   3'- -CGCUGUACUUCAGUGCCGCGGCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.