Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12783 | 5' | -54.6 | NC_003387.1 | + | 5138 | 0.74 | 0.291393 |
Target: 5'- cGCGACGaGggGcgCuCGGCGCCGG-UCg -3' miRNA: 3'- -CGCUGUaCuuCa-GuGCCGCGGCCuAG- -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 39631 | 0.68 | 0.637856 |
Target: 5'- gGCGGCAUGAGccucgacccgguGUCGCgcauGGCGUgGGAg- -3' miRNA: 3'- -CGCUGUACUU------------CAGUG----CCGCGgCCUag -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 10638 | 0.67 | 0.659931 |
Target: 5'- cGCGGCgGUGAAGggUACGGCGuUCGGccUCg -3' miRNA: 3'- -CGCUG-UACUUCa-GUGCCGC-GGCCu-AG- -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 7824 | 0.66 | 0.766956 |
Target: 5'- gGCGGCc-GAGGUCGCccGGCGCgcaggCGGaAUCg -3' miRNA: 3'- -CGCUGuaCUUCAGUG--CCGCG-----GCC-UAG- -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 41694 | 0.72 | 0.389785 |
Target: 5'- cCGACccGgcGUCGCGGCGCCGa--- -3' miRNA: 3'- cGCUGuaCuuCAGUGCCGCGGCcuag -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 22920 | 0.72 | 0.389785 |
Target: 5'- cGCGACc-GAAauuaGCGGCGCCGGAUa -3' miRNA: 3'- -CGCUGuaCUUcag-UGCCGCGGCCUAg -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 50221 | 0.71 | 0.466406 |
Target: 5'- cGCGuCAccUGGAcUUACGGCGCCuaccGGAUCg -3' miRNA: 3'- -CGCuGU--ACUUcAGUGCCGCGG----CCUAG- -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 4055 | 0.71 | 0.476529 |
Target: 5'- uGCGAUAcGccucGGUCACGGCGUgCGGGUUc -3' miRNA: 3'- -CGCUGUaCu---UCAGUGCCGCG-GCCUAG- -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 33467 | 0.69 | 0.582748 |
Target: 5'- gGCGGCc-GAAGUCGCcgaggcggucGGCGCCcGcGAUCg -3' miRNA: 3'- -CGCUGuaCUUCAGUG----------CCGCGG-C-CUAG- -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 43222 | 0.68 | 0.615761 |
Target: 5'- gGCGAgGUGAcgcaccacguGUUGCcguuccuguucGGCGCCGGGUCc -3' miRNA: 3'- -CGCUgUACUu---------CAGUG-----------CCGCGGCCUAG- -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 45132 | 0.69 | 0.593723 |
Target: 5'- gGUGACGcauuucGAGG-CGCGGCGCuCGGAg- -3' miRNA: 3'- -CGCUGUa-----CUUCaGUGCCGCG-GCCUag -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 43117 | 0.69 | 0.571815 |
Target: 5'- cGCGACGg-----CGCGGCGCCGcGGUg -3' miRNA: 3'- -CGCUGUacuucaGUGCCGCGGC-CUAg -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 29364 | 0.74 | 0.321879 |
Target: 5'- gGCGACcUGAccGUCAgCGGCGCCGGu-- -3' miRNA: 3'- -CGCUGuACUu-CAGU-GCCGCGGCCuag -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 11033 | 0.68 | 0.615761 |
Target: 5'- gGCGaACAUGAAggccgcuauGUCGCgguucGGCGCCGaGGUUa -3' miRNA: 3'- -CGC-UGUACUU---------CAGUG-----CCGCGGC-CUAG- -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 3989 | 0.73 | 0.354688 |
Target: 5'- cGCGGguCAUGGAcucGUCGCGGCGCaCGGugcUCg -3' miRNA: 3'- -CGCU--GUACUU---CAGUGCCGCG-GCCu--AG- -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 15455 | 0.69 | 0.539345 |
Target: 5'- uGCG-CGUGAAG-CGCGGCGa-GGAUg -3' miRNA: 3'- -CGCuGUACUUCaGUGCCGCggCCUAg -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 22304 | 0.68 | 0.615761 |
Target: 5'- cCGGCA---AGcCGCcugguGGCGCCGGAUCa -3' miRNA: 3'- cGCUGUacuUCaGUG-----CCGCGGCCUAG- -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 26559 | 0.67 | 0.658829 |
Target: 5'- aCGACAUGAcGcCcuugcggGCGGUGCCGGGc- -3' miRNA: 3'- cGCUGUACUuCaG-------UGCCGCGGCCUag -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 3574 | 0.72 | 0.3808 |
Target: 5'- gGCGGCGUGAauGGUaacgGCGGCGCCuGAg- -3' miRNA: 3'- -CGCUGUACU--UCAg---UGCCGCGGcCUag -5' |
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12783 | 5' | -54.6 | NC_003387.1 | + | 14679 | 0.71 | 0.42612 |
Target: 5'- cGCGGCAcgugGGAGUCGuggccgaaguuccUGGUGCgCGGGUCu -3' miRNA: 3'- -CGCUGUa---CUUCAGU-------------GCCGCG-GCCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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