miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12783 5' -54.6 NC_003387.1 + 766 0.66 0.745253
Target:  5'- cGCGGCAgcGAcGUCG-GGCagcuucucagcgaGCCGGGUCa -3'
miRNA:   3'- -CGCUGUa-CUuCAGUgCCG-------------CGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 1516 0.67 0.692819
Target:  5'- cCGACGUGcAGGcUCAgcaccuCGGUGCCgaGGAUCg -3'
miRNA:   3'- cGCUGUAC-UUC-AGU------GCCGCGG--CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 2397 0.66 0.746299
Target:  5'- gGCGGCcugaAUGAAGUCGgGGCGC---AUCg -3'
miRNA:   3'- -CGCUG----UACUUCAGUgCCGCGgccUAG- -5'
12783 5' -54.6 NC_003387.1 + 3574 0.72 0.3808
Target:  5'- gGCGGCGUGAauGGUaacgGCGGCGCCuGAg- -3'
miRNA:   3'- -CGCUGUACU--UCAg---UGCCGCGGcCUag -5'
12783 5' -54.6 NC_003387.1 + 3840 0.66 0.725176
Target:  5'- gGCGGCGc--GGUagGCGGCGCCGacGAUCc -3'
miRNA:   3'- -CGCUGUacuUCAg-UGCCGCGGC--CUAG- -5'
12783 5' -54.6 NC_003387.1 + 3989 0.73 0.354688
Target:  5'- cGCGGguCAUGGAcucGUCGCGGCGCaCGGugcUCg -3'
miRNA:   3'- -CGCU--GUACUU---CAGUGCCGCG-GCCu--AG- -5'
12783 5' -54.6 NC_003387.1 + 4055 0.71 0.476529
Target:  5'- uGCGAUAcGccucGGUCACGGCGUgCGGGUUc -3'
miRNA:   3'- -CGCUGUaCu---UCAGUGCCGCG-GCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 5138 0.74 0.291393
Target:  5'- cGCGACGaGggGcgCuCGGCGCCGG-UCg -3'
miRNA:   3'- -CGCUGUaCuuCa-GuGCCGCGGCCuAG- -5'
12783 5' -54.6 NC_003387.1 + 6033 0.76 0.243561
Target:  5'- aGCGGCAcGAGGUgcggCAgGGCGCCGGGc- -3'
miRNA:   3'- -CGCUGUaCUUCA----GUgCCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 7824 0.66 0.766956
Target:  5'- gGCGGCc-GAGGUCGCccGGCGCgcaggCGGaAUCg -3'
miRNA:   3'- -CGCUGuaCUUCAGUG--CCGCG-----GCC-UAG- -5'
12783 5' -54.6 NC_003387.1 + 8172 0.67 0.670934
Target:  5'- -aGAagcccuUGAAGUCuuucgagcccuGCGGCGCCGGGc- -3'
miRNA:   3'- cgCUgu----ACUUCAG-----------UGCCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 8294 0.69 0.593723
Target:  5'- gGCGACGUGuGGaUCAcCGGCG-CGGcgCa -3'
miRNA:   3'- -CGCUGUACuUC-AGU-GCCGCgGCCuaG- -5'
12783 5' -54.6 NC_003387.1 + 10638 0.67 0.659931
Target:  5'- cGCGGCgGUGAAGggUACGGCGuUCGGccUCg -3'
miRNA:   3'- -CGCUG-UACUUCa-GUGCCGC-GGCCu-AG- -5'
12783 5' -54.6 NC_003387.1 + 10962 0.69 0.571815
Target:  5'- uUGACGUcGAGGUCgcacacaccGCGGCcaGCCGGGUg -3'
miRNA:   3'- cGCUGUA-CUUCAG---------UGCCG--CGGCCUAg -5'
12783 5' -54.6 NC_003387.1 + 11033 0.68 0.615761
Target:  5'- gGCGaACAUGAAggccgcuauGUCGCgguucGGCGCCGaGGUUa -3'
miRNA:   3'- -CGC-UGUACUU---------CAGUG-----CCGCGGC-CUAG- -5'
12783 5' -54.6 NC_003387.1 + 13289 0.7 0.497094
Target:  5'- cGCGAUAccGAGcUUGCGGCGCCcGGUCa -3'
miRNA:   3'- -CGCUGUacUUC-AGUGCCGCGGcCUAG- -5'
12783 5' -54.6 NC_003387.1 + 14679 0.71 0.42612
Target:  5'- cGCGGCAcgugGGAGUCGuggccgaaguuccUGGUGCgCGGGUCu -3'
miRNA:   3'- -CGCUGUa---CUUCAGU-------------GCCGCG-GCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 14914 0.67 0.703679
Target:  5'- aCGACGUGAcGgcugCGCGGCuaCCGGcgCa -3'
miRNA:   3'- cGCUGUACUuCa---GUGCCGc-GGCCuaG- -5'
12783 5' -54.6 NC_003387.1 + 15455 0.69 0.539345
Target:  5'- uGCG-CGUGAAG-CGCGGCGa-GGAUg -3'
miRNA:   3'- -CGCuGUACUUCaGUGCCGCggCCUAg -5'
12783 5' -54.6 NC_003387.1 + 18205 0.67 0.703679
Target:  5'- -gGGCAgcccGAGGaUCGCGGCGCCGcagCg -3'
miRNA:   3'- cgCUGUa---CUUC-AGUGCCGCGGCcuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.