miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12783 5' -54.6 NC_003387.1 + 47950 1.12 0.000707
Target:  5'- uGCGACAUGAAGUCACGGCGCCGGAUCg -3'
miRNA:   3'- -CGCUGUACUUCAGUGCCGCGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 49201 0.76 0.225145
Target:  5'- gGCGGCGgcgGggG-CACuGGCGCCGGuUCg -3'
miRNA:   3'- -CGCUGUa--CuuCaGUG-CCGCGGCCuAG- -5'
12783 5' -54.6 NC_003387.1 + 6033 0.76 0.243561
Target:  5'- aGCGGCAcGAGGUgcggCAgGGCGCCGGGc- -3'
miRNA:   3'- -CGCUGUaCUUCA----GUgCCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 20849 0.75 0.256523
Target:  5'- gGCGACggGAuaGGUCAgcaaGGCGCCGG-UCa -3'
miRNA:   3'- -CGCUGuaCU--UCAGUg---CCGCGGCCuAG- -5'
12783 5' -54.6 NC_003387.1 + 20226 0.75 0.284133
Target:  5'- aGCGGCA-GucGUCgcaccACGGCGCCgGGGUCg -3'
miRNA:   3'- -CGCUGUaCuuCAG-----UGCCGCGG-CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 5138 0.74 0.291393
Target:  5'- cGCGACGaGggGcgCuCGGCGCCGG-UCg -3'
miRNA:   3'- -CGCUGUaCuuCa-GuGCCGCGGCCuAG- -5'
12783 5' -54.6 NC_003387.1 + 29364 0.74 0.321879
Target:  5'- gGCGACcUGAccGUCAgCGGCGCCGGu-- -3'
miRNA:   3'- -CGCUGuACUu-CAGU-GCCGCGGCCuag -5'
12783 5' -54.6 NC_003387.1 + 3989 0.73 0.354688
Target:  5'- cGCGGguCAUGGAcucGUCGCGGCGCaCGGugcUCg -3'
miRNA:   3'- -CGCU--GUACUU---CAGUGCCGCG-GCCu--AG- -5'
12783 5' -54.6 NC_003387.1 + 3574 0.72 0.3808
Target:  5'- gGCGGCGUGAauGGUaacgGCGGCGCCuGAg- -3'
miRNA:   3'- -CGCUGUACU--UCAg---UGCCGCGGcCUag -5'
12783 5' -54.6 NC_003387.1 + 41694 0.72 0.389785
Target:  5'- cCGACccGgcGUCGCGGCGCCGa--- -3'
miRNA:   3'- cGCUGuaCuuCAGUGCCGCGGCcuag -5'
12783 5' -54.6 NC_003387.1 + 22920 0.72 0.389785
Target:  5'- cGCGACc-GAAauuaGCGGCGCCGGAUa -3'
miRNA:   3'- -CGCUGuaCUUcag-UGCCGCGGCCUAg -5'
12783 5' -54.6 NC_003387.1 + 14679 0.71 0.42612
Target:  5'- cGCGGCAcgugGGAGUCGuggccgaaguuccUGGUGCgCGGGUCu -3'
miRNA:   3'- -CGCUGUa---CUUCAGU-------------GCCGCG-GCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 32718 0.71 0.436727
Target:  5'- --uACGUGAGGUCgaACGGCGCCGcGGa- -3'
miRNA:   3'- cgcUGUACUUCAG--UGCCGCGGC-CUag -5'
12783 5' -54.6 NC_003387.1 + 23338 0.71 0.446501
Target:  5'- gGCGAgAUcGAGGUCGucacCGGCGCCGcugacGGUCa -3'
miRNA:   3'- -CGCUgUA-CUUCAGU----GCCGCGGC-----CUAG- -5'
12783 5' -54.6 NC_003387.1 + 50221 0.71 0.466406
Target:  5'- cGCGuCAccUGGAcUUACGGCGCCuaccGGAUCg -3'
miRNA:   3'- -CGCuGU--ACUUcAGUGCCGCGG----CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 4055 0.71 0.476529
Target:  5'- uGCGAUAcGccucGGUCACGGCGUgCGGGUUc -3'
miRNA:   3'- -CGCUGUaCu---UCAGUGCCGCG-GCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 13289 0.7 0.497094
Target:  5'- cGCGAUAccGAGcUUGCGGCGCCcGGUCa -3'
miRNA:   3'- -CGCUGUacUUC-AGUGCCGCGGcCUAG- -5'
12783 5' -54.6 NC_003387.1 + 15455 0.69 0.539345
Target:  5'- uGCG-CGUGAAG-CGCGGCGa-GGAUg -3'
miRNA:   3'- -CGCuGUACUUCaGUGCCGCggCCUAg -5'
12783 5' -54.6 NC_003387.1 + 43117 0.69 0.571815
Target:  5'- cGCGACGg-----CGCGGCGCCGcGGUg -3'
miRNA:   3'- -CGCUGUacuucaGUGCCGCGGC-CUAg -5'
12783 5' -54.6 NC_003387.1 + 10962 0.69 0.571815
Target:  5'- uUGACGUcGAGGUCgcacacaccGCGGCcaGCCGGGUg -3'
miRNA:   3'- cGCUGUA-CUUCAG---------UGCCG--CGGCCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.