miRNA display CGI


Results 41 - 58 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12783 5' -54.6 NC_003387.1 + 766 0.66 0.745253
Target:  5'- cGCGGCAgcGAcGUCG-GGCagcuucucagcgaGCCGGGUCa -3'
miRNA:   3'- -CGCUGUa-CUuCAGUgCCG-------------CGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 2397 0.66 0.746299
Target:  5'- gGCGGCcugaAUGAAGUCGgGGCGC---AUCg -3'
miRNA:   3'- -CGCUG----UACUUCAGUgCCGCGgccUAG- -5'
12783 5' -54.6 NC_003387.1 + 8172 0.67 0.670934
Target:  5'- -aGAagcccuUGAAGUCuuucgagcccuGCGGCGCCGGGc- -3'
miRNA:   3'- cgCUgu----ACUUCAG-----------UGCCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 22179 0.67 0.667636
Target:  5'- gGCGGCGguccauGUCGgGGCGCCcguugcacuugucgGGGUCg -3'
miRNA:   3'- -CGCUGUacuu--CAGUgCCGCGG--------------CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 28888 0.67 0.659931
Target:  5'- uGCGGCGgcuuAGgCGCgGGCGCCGGGc- -3'
miRNA:   3'- -CGCUGUacu-UCaGUG-CCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 49201 0.76 0.225145
Target:  5'- gGCGGCGgcgGggG-CACuGGCGCCGGuUCg -3'
miRNA:   3'- -CGCUGUa--CuuCaGUG-CCGCGGCCuAG- -5'
12783 5' -54.6 NC_003387.1 + 6033 0.76 0.243561
Target:  5'- aGCGGCAcGAGGUgcggCAgGGCGCCGGGc- -3'
miRNA:   3'- -CGCUGUaCUUCA----GUgCCGCGGCCUag -5'
12783 5' -54.6 NC_003387.1 + 20849 0.75 0.256523
Target:  5'- gGCGACggGAuaGGUCAgcaaGGCGCCGG-UCa -3'
miRNA:   3'- -CGCUGuaCU--UCAGUg---CCGCGGCCuAG- -5'
12783 5' -54.6 NC_003387.1 + 20226 0.75 0.284133
Target:  5'- aGCGGCA-GucGUCgcaccACGGCGCCgGGGUCg -3'
miRNA:   3'- -CGCUGUaCuuCAG-----UGCCGCGG-CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 23338 0.71 0.446501
Target:  5'- gGCGAgAUcGAGGUCGucacCGGCGCCGcugacGGUCa -3'
miRNA:   3'- -CGCUgUA-CUUCAGU----GCCGCGGC-----CUAG- -5'
12783 5' -54.6 NC_003387.1 + 13289 0.7 0.497094
Target:  5'- cGCGAUAccGAGcUUGCGGCGCCcGGUCa -3'
miRNA:   3'- -CGCUGUacUUC-AGUGCCGCGGcCUAG- -5'
12783 5' -54.6 NC_003387.1 + 32718 0.71 0.436727
Target:  5'- --uACGUGAGGUCgaACGGCGCCGcGGa- -3'
miRNA:   3'- cgcUGUACUUCAG--UGCCGCGGC-CUag -5'
12783 5' -54.6 NC_003387.1 + 10962 0.69 0.571815
Target:  5'- uUGACGUcGAGGUCgcacacaccGCGGCcaGCCGGGUg -3'
miRNA:   3'- cGCUGUA-CUUCAG---------UGCCG--CGGCCUAg -5'
12783 5' -54.6 NC_003387.1 + 23815 0.68 0.604729
Target:  5'- cGCGcagcagauACGUGAGGgCGCcGCGCCGGGacUCg -3'
miRNA:   3'- -CGC--------UGUACUUCaGUGcCGCGGCCU--AG- -5'
12783 5' -54.6 NC_003387.1 + 31470 0.68 0.604729
Target:  5'- cCGACuccucGUCGCGGCGCaccaugccgacCGGAUCg -3'
miRNA:   3'- cGCUGuacuuCAGUGCCGCG-----------GCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 28358 0.68 0.615761
Target:  5'- cGCGAaagAUGuucauGUCgAUGGCGCCuGGAUCc -3'
miRNA:   3'- -CGCUg--UACuu---CAG-UGCCGCGG-CCUAG- -5'
12783 5' -54.6 NC_003387.1 + 36361 0.68 0.637856
Target:  5'- cUGAUA-GAGGUUGuccaagcccuCGGCGCCGGGUUg -3'
miRNA:   3'- cGCUGUaCUUCAGU----------GCCGCGGCCUAG- -5'
12783 5' -54.6 NC_003387.1 + 48063 0.66 0.746299
Target:  5'- gGCGGCGUc-GGcCGCuuGGCGCCGGGc- -3'
miRNA:   3'- -CGCUGUAcuUCaGUG--CCGCGGCCUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.