miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 5' -57.5 NC_003387.1 + 31523 0.69 0.404465
Target:  5'- cUGuuCCACGCGGCCAgcacggcgugcaccUgCUCCUCgGAa -3'
miRNA:   3'- aGCuuGGUGCGCCGGU--------------A-GAGGAGgCU- -5'
12784 5' -57.5 NC_003387.1 + 36791 0.69 0.398147
Target:  5'- gUCG-GCCGgGCGGCCuUCUCa-CCGAu -3'
miRNA:   3'- -AGCuUGGUgCGCCGGuAGAGgaGGCU- -5'
12784 5' -57.5 NC_003387.1 + 1721 0.7 0.389231
Target:  5'- gCGGGCCGgGCGGCgCAUC-CCggugCUGAu -3'
miRNA:   3'- aGCUUGGUgCGCCG-GUAGaGGa---GGCU- -5'
12784 5' -57.5 NC_003387.1 + 25438 0.7 0.389231
Target:  5'- -aGGGCCGCcaguGCGGCguUCUCCUCgCGc -3'
miRNA:   3'- agCUUGGUG----CGCCGguAGAGGAG-GCu -5'
12784 5' -57.5 NC_003387.1 + 48797 0.7 0.363281
Target:  5'- cUGAucGCCGCggcgGCGGCCAUCgUCCcgCCGGu -3'
miRNA:   3'- aGCU--UGGUG----CGCCGGUAG-AGGa-GGCU- -5'
12784 5' -57.5 NC_003387.1 + 14813 0.7 0.34666
Target:  5'- cCGAGCCACGCGGgCAgcgggUCgcCCUCgGGg -3'
miRNA:   3'- aGCUUGGUGCGCCgGU-----AGa-GGAGgCU- -5'
12784 5' -57.5 NC_003387.1 + 7131 0.7 0.34666
Target:  5'- gUCGAucaGCCACGCgaGGCCcggCUCCUCgGc -3'
miRNA:   3'- -AGCU---UGGUGCG--CCGGua-GAGGAGgCu -5'
12784 5' -57.5 NC_003387.1 + 29436 0.71 0.338556
Target:  5'- gCGGcCCGCGCGGUCGcuaUCCUCgCGAu -3'
miRNA:   3'- aGCUuGGUGCGCCGGUag-AGGAG-GCU- -5'
12784 5' -57.5 NC_003387.1 + 4033 0.72 0.292847
Target:  5'- -aGAACCGCGUGGCgGcCUCCuggggcgacgauUCCGAg -3'
miRNA:   3'- agCUUGGUGCGCCGgUaGAGG------------AGGCU- -5'
12784 5' -57.5 NC_003387.1 + 23302 0.75 0.175109
Target:  5'- gCGGGCCGCuGCGGCgGcCUCCUCCu- -3'
miRNA:   3'- aGCUUGGUG-CGCCGgUaGAGGAGGcu -5'
12784 5' -57.5 NC_003387.1 + 47731 1.09 0.000662
Target:  5'- gUCGAACCACGCGGCCAUCUCCUCCGAc -3'
miRNA:   3'- -AGCUUGGUGCGCCGGUAGAGGAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.