miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12787 3' -56.1 NC_003387.1 + 12425 0.67 0.609218
Target:  5'- gCGGCGcuugccgucGUCGuCCUCGAUCGagGgGUCGc -3'
miRNA:   3'- -GCCGU---------UAGU-GGAGCUAGCggCgCAGC- -5'
12787 3' -56.1 NC_003387.1 + 43389 0.67 0.609218
Target:  5'- uGGUGcucgacgacGUCgACCUCGGggGCCGUGUCa -3'
miRNA:   3'- gCCGU---------UAG-UGGAGCUagCGGCGCAGc -5'
12787 3' -56.1 NC_003387.1 + 11679 0.67 0.598392
Target:  5'- uCGGCGAUCGCgUgGGUgucaaUGUCGcCGUCGa -3'
miRNA:   3'- -GCCGUUAGUGgAgCUA-----GCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 10404 0.67 0.598392
Target:  5'- uCGGUGAUCugCUCGucgCGCCacgccuugauCGUCGg -3'
miRNA:   3'- -GCCGUUAGugGAGCua-GCGGc---------GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 16304 0.67 0.598392
Target:  5'- aCGGCAcgaaaugCAgCUCGG-CGCCGgUGUCGa -3'
miRNA:   3'- -GCCGUua-----GUgGAGCUaGCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 12228 0.67 0.598392
Target:  5'- cCGGCGGUCGCCagCGca-GCgGCGcUCGg -3'
miRNA:   3'- -GCCGUUAGUGGa-GCuagCGgCGC-AGC- -5'
12787 3' -56.1 NC_003387.1 + 49252 0.68 0.576833
Target:  5'- -aGCGAuuUCACCUCGc-CGCCGCGcagCGa -3'
miRNA:   3'- gcCGUU--AGUGGAGCuaGCGGCGCa--GC- -5'
12787 3' -56.1 NC_003387.1 + 52042 0.68 0.576833
Target:  5'- uGGCGcgCgACCUCGcuaagCGUCGcCGUCGa -3'
miRNA:   3'- gCCGUuaG-UGGAGCua---GCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 24850 0.68 0.576833
Target:  5'- gGGCuc-CugCUCGAccgCGCCGgUGUCGa -3'
miRNA:   3'- gCCGuuaGugGAGCUa--GCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 13579 0.68 0.566116
Target:  5'- gGGCAggacGUCGgCU-GGUCGCCGCaGUCu -3'
miRNA:   3'- gCCGU----UAGUgGAgCUAGCGGCG-CAGc -5'
12787 3' -56.1 NC_003387.1 + 11682 0.68 0.566116
Target:  5'- gGGCugauuAUCGCCgCGGUCGUCGgGcUCGc -3'
miRNA:   3'- gCCGu----UAGUGGaGCUAGCGGCgC-AGC- -5'
12787 3' -56.1 NC_003387.1 + 12402 0.68 0.566116
Target:  5'- aGGCGAUCAaCUcCGGUgCGCCGCuGUgGg -3'
miRNA:   3'- gCCGUUAGUgGA-GCUA-GCGGCG-CAgC- -5'
12787 3' -56.1 NC_003387.1 + 50714 0.68 0.559711
Target:  5'- gGGCGcgcacaaggucgagcGUUACCUCGAcgcCGUCGCGUUu -3'
miRNA:   3'- gCCGU---------------UAGUGGAGCUa--GCGGCGCAGc -5'
12787 3' -56.1 NC_003387.1 + 22836 0.68 0.555452
Target:  5'- -cGCGAUCGCCaacgCGAUCGgCGCG-Ca -3'
miRNA:   3'- gcCGUUAGUGGa---GCUAGCgGCGCaGc -5'
12787 3' -56.1 NC_003387.1 + 7575 0.68 0.555452
Target:  5'- -cGCGAcCACCUcCGAgCGCCGCGccUCGa -3'
miRNA:   3'- gcCGUUaGUGGA-GCUaGCGGCGC--AGC- -5'
12787 3' -56.1 NC_003387.1 + 41962 0.68 0.555452
Target:  5'- aGGCucgUACCggCGAUCgcgGCCGUGUCa -3'
miRNA:   3'- gCCGuuaGUGGa-GCUAG---CGGCGCAGc -5'
12787 3' -56.1 NC_003387.1 + 22497 0.68 0.544846
Target:  5'- gGGCGAcgGCCUCGG-CGgCGCGcUCGa -3'
miRNA:   3'- gCCGUUagUGGAGCUaGCgGCGC-AGC- -5'
12787 3' -56.1 NC_003387.1 + 31056 0.68 0.544846
Target:  5'- uCGGCGAaCACgugCUCGGcCGCCGCcgcgGUCGa -3'
miRNA:   3'- -GCCGUUaGUG---GAGCUaGCGGCG----CAGC- -5'
12787 3' -56.1 NC_003387.1 + 41037 0.68 0.543789
Target:  5'- aCGGCGAcauugaCACCcacgCGAUCGCCGaggccgcUGUCGa -3'
miRNA:   3'- -GCCGUUa-----GUGGa---GCUAGCGGC-------GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 11388 0.68 0.534307
Target:  5'- gCGGCGAUCggcGCCaCGcUgGCCGCGaUCGg -3'
miRNA:   3'- -GCCGUUAG---UGGaGCuAgCGGCGC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.