miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12787 3' -56.1 NC_003387.1 + 48040 0.67 0.652621
Target:  5'- aGGUucagCACCUCGucuugcuUgGCgGCGUCGg -3'
miRNA:   3'- gCCGuua-GUGGAGCu------AgCGgCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 6839 0.67 0.652621
Target:  5'- aGGuCGAUCGCC-CGcUCgGCCGCGgcgCGc -3'
miRNA:   3'- gCC-GUUAGUGGaGCuAG-CGGCGCa--GC- -5'
12787 3' -56.1 NC_003387.1 + 41584 0.67 0.652621
Target:  5'- aGGC----GCCUUGAUCGCgGCGgUCa -3'
miRNA:   3'- gCCGuuagUGGAGCUAGCGgCGC-AGc -5'
12787 3' -56.1 NC_003387.1 + 38377 0.67 0.641774
Target:  5'- aGGCu----CCUCGAUCcgcuCCGCGUUGa -3'
miRNA:   3'- gCCGuuaguGGAGCUAGc---GGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 38777 0.67 0.641774
Target:  5'- gCGGCAAUCacacgcuguacaGCCUCG---GCgGCGUCa -3'
miRNA:   3'- -GCCGUUAG------------UGGAGCuagCGgCGCAGc -5'
12787 3' -56.1 NC_003387.1 + 1698 0.67 0.641774
Target:  5'- gCGGCGGUCGaCUgGAUCGCUgaGCGggcCGg -3'
miRNA:   3'- -GCCGUUAGUgGAgCUAGCGG--CGCa--GC- -5'
12787 3' -56.1 NC_003387.1 + 20486 0.67 0.641774
Target:  5'- aGGCGgucggccagcucGUCGCgCUCGcgcagCGCgGCGUCGc -3'
miRNA:   3'- gCCGU------------UAGUG-GAGCua---GCGgCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 2547 0.67 0.640688
Target:  5'- -cGCGGUCGCCgCGGcagauccUCGCCGUGUaCGc -3'
miRNA:   3'- gcCGUUAGUGGaGCU-------AGCGGCGCA-GC- -5'
12787 3' -56.1 NC_003387.1 + 11503 0.67 0.640688
Target:  5'- gGGCGGU-GCCUaCGAUCGUcggccugCGUGUCGc -3'
miRNA:   3'- gCCGUUAgUGGA-GCUAGCG-------GCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 3940 0.67 0.630917
Target:  5'- gCGGCGAUCAgCggCGAgcUgGCUGCGcCGa -3'
miRNA:   3'- -GCCGUUAGUgGa-GCU--AgCGGCGCaGC- -5'
12787 3' -56.1 NC_003387.1 + 23834 0.67 0.630917
Target:  5'- cCGGCGcccgCGCCUaagcCGCCGCaGUCGg -3'
miRNA:   3'- -GCCGUua--GUGGAgcuaGCGGCG-CAGC- -5'
12787 3' -56.1 NC_003387.1 + 13502 0.67 0.630917
Target:  5'- cCGGCGGguUCGCCggUGGagUCGCUgacaGCGUCGg -3'
miRNA:   3'- -GCCGUU--AGUGGa-GCU--AGCGG----CGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 47183 0.67 0.628746
Target:  5'- uGGUggUCGcCCUCGGggcucagguggcCGCCGgUGUCGg -3'
miRNA:   3'- gCCGuuAGU-GGAGCUa-----------GCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 24630 0.67 0.62766
Target:  5'- gGGCGAcccgacgCACCUCGcccugcugcgcgagGUCGCCaGCGcCGa -3'
miRNA:   3'- gCCGUUa------GUGGAGC--------------UAGCGG-CGCaGC- -5'
12787 3' -56.1 NC_003387.1 + 10593 0.67 0.62766
Target:  5'- uGGCAaugaggccagcacgGUCGCCUCGGUCaugcaggacgcGaCCGCGgCGg -3'
miRNA:   3'- gCCGU--------------UAGUGGAGCUAG-----------C-GGCGCaGC- -5'
12787 3' -56.1 NC_003387.1 + 31723 0.67 0.624404
Target:  5'- cCGGCGcuGUCGCCgaCGAgagcuaucgcggcauUCGCgGCGUUGc -3'
miRNA:   3'- -GCCGU--UAGUGGa-GCU---------------AGCGgCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 51446 0.67 0.620062
Target:  5'- aGGCGcAUCACCgUGAacaccUCGCCGgggucCGUCGg -3'
miRNA:   3'- gCCGU-UAGUGGaGCU-----AGCGGC-----GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 19529 0.67 0.609218
Target:  5'- gGGCAAcUCGCUgcugcCGAUCGCgCuCGUCGa -3'
miRNA:   3'- gCCGUU-AGUGGa----GCUAGCG-GcGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 43389 0.67 0.609218
Target:  5'- uGGUGcucgacgacGUCgACCUCGGggGCCGUGUCa -3'
miRNA:   3'- gCCGU---------UAG-UGGAGCUagCGGCGCAGc -5'
12787 3' -56.1 NC_003387.1 + 4053 0.67 0.609218
Target:  5'- gGuGCGAUaCGCCUCGGUCaCgGCGUgCGg -3'
miRNA:   3'- gC-CGUUA-GUGGAGCUAGcGgCGCA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.