miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12787 3' -56.1 NC_003387.1 + 44775 0.73 0.306094
Target:  5'- gCGGCGccGUCuugauuucgGCCUUGAUCGCCGCacUCGa -3'
miRNA:   3'- -GCCGU--UAG---------UGGAGCUAGCGGCGc-AGC- -5'
12787 3' -56.1 NC_003387.1 + 43350 0.73 0.313647
Target:  5'- uCGGgGGUCGCCUCGGcCGCCaccggcuCGUCGa -3'
miRNA:   3'- -GCCgUUAGUGGAGCUaGCGGc------GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 11326 0.73 0.313647
Target:  5'- uCGuGCug-CGCCUCGGUCGCCcgGCGcUCGg -3'
miRNA:   3'- -GC-CGuuaGUGGAGCUAGCGG--CGC-AGC- -5'
12787 3' -56.1 NC_003387.1 + 30238 0.72 0.33715
Target:  5'- aGGCcGUCGCC-CGGUacgaCGCCGCGgUCGu -3'
miRNA:   3'- gCCGuUAGUGGaGCUA----GCGGCGC-AGC- -5'
12787 3' -56.1 NC_003387.1 + 17107 0.72 0.345264
Target:  5'- uCGGCGGgcuccUCgggGCCguaggCGAUCGCUGUGUCGa -3'
miRNA:   3'- -GCCGUU-----AG---UGGa----GCUAGCGGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 15102 0.72 0.370438
Target:  5'- gCGGCGAUUACCUCGGcagUGCgGUG-CGg -3'
miRNA:   3'- -GCCGUUAGUGGAGCUa--GCGgCGCaGC- -5'
12787 3' -56.1 NC_003387.1 + 29804 0.72 0.370438
Target:  5'- cCGGCGccgcuaauuucgGUCGCgUUGGcCGUCGCGUCGg -3'
miRNA:   3'- -GCCGU------------UAGUGgAGCUaGCGGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 28566 0.71 0.37649
Target:  5'- gCGGCGAUCGCCgUCGAcgacgcccucaagcUcaacacCGCCGCGUaCGg -3'
miRNA:   3'- -GCCGUUAGUGG-AGCU--------------A------GCGGCGCA-GC- -5'
12787 3' -56.1 NC_003387.1 + 8333 0.71 0.379104
Target:  5'- gCGGCGAgcuUCGCCUCG-UCGaccaCCGgGUCGu -3'
miRNA:   3'- -GCCGUU---AGUGGAGCuAGC----GGCgCAGC- -5'
12787 3' -56.1 NC_003387.1 + 30890 0.71 0.379104
Target:  5'- gGGCcAUCGCCgggaaagcgUUGGUCGCCacgGCGUCGc -3'
miRNA:   3'- gCCGuUAGUGG---------AGCUAGCGG---CGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 37544 0.71 0.387904
Target:  5'- gGGCcuccucgucGAUCACCUCGcggCGC-GCGUCGa -3'
miRNA:   3'- gCCG---------UUAGUGGAGCua-GCGgCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 48268 0.71 0.396838
Target:  5'- uCGGCGGUCGgCUCGGccuUCGgCGCGggcUCGg -3'
miRNA:   3'- -GCCGUUAGUgGAGCU---AGCgGCGC---AGC- -5'
12787 3' -56.1 NC_003387.1 + 26219 0.71 0.404991
Target:  5'- gCGGCGcuucauucacagcGUCGCCccggCGAUCGCCGUGcUGa -3'
miRNA:   3'- -GCCGU-------------UAGUGGa---GCUAGCGGCGCaGC- -5'
12787 3' -56.1 NC_003387.1 + 25472 0.71 0.405903
Target:  5'- aGGCAugccgggcCGCCUCGAcCGCgCGUGUCa -3'
miRNA:   3'- gCCGUua------GUGGAGCUaGCG-GCGCAGc -5'
12787 3' -56.1 NC_003387.1 + 42037 0.71 0.411404
Target:  5'- cCGGCGGcCACCgccgaggcggccgUGGUCgcaGCCGCGUCGa -3'
miRNA:   3'- -GCCGUUaGUGGa------------GCUAG---CGGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 10252 0.71 0.415097
Target:  5'- aCGGCGggAUCGCCcggUUGGUCGCgGCGcacUCGg -3'
miRNA:   3'- -GCCGU--UAGUGG---AGCUAGCGgCGC---AGC- -5'
12787 3' -56.1 NC_003387.1 + 46422 0.7 0.424418
Target:  5'- uCGGCG---ACCUCGGUCagcacggccacgGUCGCGUCGu -3'
miRNA:   3'- -GCCGUuagUGGAGCUAG------------CGGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 48777 0.7 0.424418
Target:  5'- uCGGCGcagccagcUCGCCgcuGAUCGCCGCGgCGg -3'
miRNA:   3'- -GCCGUu-------AGUGGag-CUAGCGGCGCaGC- -5'
12787 3' -56.1 NC_003387.1 + 4510 0.7 0.424418
Target:  5'- uCGuGCgGGUCACCUCGGcCGCCGcCGcCGg -3'
miRNA:   3'- -GC-CG-UUAGUGGAGCUaGCGGC-GCaGC- -5'
12787 3' -56.1 NC_003387.1 + 50421 0.7 0.433863
Target:  5'- gCGGCAgaucGUCGCCUCGGcguaCGCCaGCGagGa -3'
miRNA:   3'- -GCCGU----UAGUGGAGCUa---GCGG-CGCagC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.